Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq54283 275 1e-71 seq10104 269 5e-70 seq34200 268 2e-69 seq50027 264 2e-68 seq45615 259 8e-67 seq64838 244 2e-62 seq65203 232 1e-58 seq40930 230 4e-58 seq27164 174 3e-41 seq6897 140 6e-31 seq1234 132 8e-29 seq11839 131 3e-28 seq4307 86.0 1e-14 seq34921 84.2 4e-14 seq53127 80.6 5e-13 >seq54283 Length=1887 Score = 275 bits (304), Expect = 1e-71 Identities = 238/294 (81%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 270 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 329 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 330 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT-----GCTTGGGG 384 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| |||| |||||||| |||||| ||| |||| Sbjct 385 AATTCTGCTTCACAATGATAGGAAGAGCCAACATGGAAGGATCCAAAAGCGGCGTTGCTA 444 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | ||| |||| | |||||||||||||||||| ||||||| |||||| ||||||| || Sbjct 445 TCAACACTTGCCCATCACAAGCCAGTTATCCCTATGGTAACCTTTCTGACACCTCTGGCT 504 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||| ||||| ||||| || ||| ||||||| Sbjct 505 TAAAACTCAAAAAGCCACAAGGATCGTGAGGCCCCACTTGCACGGTCTGTATTC 558 >seq10104 Length=3629 Score = 269 bits (298), Expect = 5e-70 Identities = 189/213 (89%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||| Sbjct 3629 CATCAGTAGGGTAAAACTAACCTGTTTTGCGACCATCTAAACCCAGCTCATGTTCCCTAT 3570 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| Sbjct 3569 TACTGGGTGAACAATCCAACGCTTGGGGAAGTCTGTTTCACAATGATAGGAAGAGCCGAC 3510 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 3509 ATCGAAGGATCAAAAAGCAGCGTCGCTATGAACGCTTGGCTGCCACAAGACAGTTATCCC 3450 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||| ||||| || |||||| ||||||| Sbjct 3449 TGTGGTACCTTTT-TGACACCTC-CTCCTCAAA 3419 >seq34200 Length=854 Score = 268 bits (296), Expect = 2e-69 Identities = 236/293 (81%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 576 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 517 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 516 ACAACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 457 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| ||||| ||||||||||||| |||| |||| Sbjct 456 AATTCTGCTTCACAATGATAGGAAGAGCTGACATTGAAGGATCAAAAAATGACGTTGCTA 397 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||| | |||||||| |||||||| |||||||||||| |||||| || Sbjct 396 TGAACACTTGGCCACTGCAAGCCAGGTATCCCTGCAGTAACTTTTCTGACACCTCCGGCT 337 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | |||||| | ||||| | |||||| || |||||| Sbjct 336 TAAAACCCAAAAAGCCAGAAGGATTGTGAGGCCCCGCTTTCACAGTCTGTATT 284 >seq50027 Length=2005 Score = 264 bits (292), Expect = 2e-68 Identities = 181/204 (89%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 1862 TCATCAGTAGGATAAAACTAACCTGTCTCATGATGGGCTAACCCCAGCTCACGTTCCCTA 1803 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||| | Sbjct 1802 TTAGTGGGTGAACAATCCAACGCTTGGGCAATTCGGCTTCACAATGATAGGACGAGCCAA 1743 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| | | ||||| |||||||||| |||||||||||||||||| Sbjct 1742 CATGGAAGGATCAAAAAGTGGCATTGCTATCAACGCTTGGCCGCCACAAGCCAGTTATCC 1683 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 1682 CTGTGGTAACTTTTCTGACACCTC 1659 >seq45615 Length=859 Score = 259 bits (286), Expect = 8e-67 Identities = 212/258 (82%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| || Sbjct 81 TAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCGAGCTCACATTCCCTATTACTGC 140 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||||||| |||||||| ||| |||||||| | || || |||||||| ||| ||| Sbjct 141 GTGAACAATGCAACGCTTGGGGAAGTCTGCTTCACAAGGAGAGCAAGAGCCGGCATTGAA 200 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||||||||| | || ||||||| ||||||| | ||||||||||||||||||||||| Sbjct 201 GGATCAAAAAGCGGCATCACTATGAATGCTTGGCCGTCACAAGCCAGTTATCCCTGTGGT 260 Query 218 AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACT 277 |||||||||| |||||| || | ||| | | | |||||| | ||||| | || Sbjct 261 AACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATTGTGAGGCCCCGCT 320 Query 278 TTCATGGTTTGTATTCAC 295 |||||||| ||||||||| Sbjct 321 TTCATGGTCTGTATTCAC 338 >seq64838 Length=3435 Score = 244 bits (270), Expect = 2e-62 Identities = 196/235 (83%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||| |||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 682 TACCAAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 741 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || |||||||||||||||| ||||||||||| ||||||||||||||| |||| | Sbjct 742 ACAACAGTCTAAACCCAGCTCATGTTCCCTATTACTGGGTGAACAATCCAGTGCTTGGGG 801 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| ||||||||||||||| |||| | || ||| Sbjct 802 AATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAGTAAGCGGCATCACTA 861 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| ||||||| ||||||| | |||||||||||||||||||||| |||||| Sbjct 862 TGAATGCTTGGCCATCACAAGCTGGGTATCCCTGTGGTAACTTTTCTGACACCTC 916 >seq65203 Length=936 Score = 232 bits (256), Expect = 1e-58 Identities = 202/251 (80%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| Sbjct 639 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACAGTCTAAACCCAGCTCATGTTCCCTA 698 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 699 TTACTGGGTGAACAATCCAGTGCTTGGGGAATTCTGCTTCACAATGATAGGAAGAGCTGA 758 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| || | ||| ||| ||||| |||||||| | |||||||||||||||| Sbjct 759 CATCAAA-----CACTAGCGGCGTTGCTATCAACGCTTGCCCATCACAAGCCAGTTATCC 813 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 814 CTGTGGTAACTTTTCTGACACCTCGTGCTTAAAACCCAAAAAGCCACAAGGATCGTGAGG 873 Query 271 CCACACTTTCA 281 || |||||||| Sbjct 874 CCCCACTTTCA 884 >seq40930 Length=559 Score = 230 bits (254), Expect = 4e-58 Identities = 200/247 (81%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 319 CATCAGTAGGGGAAAACTAACCTGTCTCACGATGGCCTAAACCCAGCTCACGTTCC-TAT 377 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||| |||| |||||||||||| ||||||||||||||| || Sbjct 378 TAGTGGGTGAACAAT-----GCTTGGGGAATTCTGCTTCACAATGATAGGAAGAGCCAAC 432 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||||||| |||||| ||| ||||| ||| |||| | ||||||||||||||||| Sbjct 433 ATGGAAGGATCCAAAAGCGGCGTTGCTATCAACACTTGCCCATCACAAGCCAGTTATCCC 492 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | ||||||| |||||| ||||||| || | ||| | | | | |||||||| |||| Sbjct 493 TATGGTAACCTTTCTGACACCTCTGGCTTAAAACTCAAAAAGCCACAAGGATCGTGAGGC 552 Query 272 CACACTT 278 ||||| Sbjct 553 ACCACTT 559 >seq27164 Length=34070 Score = 174 bits (192), Expect = 3e-41 Identities = 131/154 (85%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| || ||||||||||| ||||||| || |||||||||||| |||| ||||||| Sbjct 14866 TCATCAGGAGAGTAAAACTAACTTGTCTCACAACAGTCTAAACCCAGTTCACATTCCCTA 14925 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||| ||||||| |||| || ||||||||| |||||||||||||| || Sbjct 14926 TTAGTGGGTGACTAATCCAAAGCTTGGTGAGTTCTGCTTCACAATGATAGGAAGAGCAGA 14985 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 || |||||||||||||||| | ||||||||||| Sbjct 14986 CACCGAAGGATCAAAAAGCGGCATCGCTATGAAC 15019 >seq6897 Length=1202 Score = 140 bits (154), Expect = 6e-31 Identities = 117/142 (82%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | || | | || ||||||||||||||||||||||||||||| Sbjct 226 TACTGAGCAGGATTACTAGTGTGACAACATATCATCAGTAGGGTAAAACTAACCTGTCTC 285 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | ||||||||||||||||| ||||||||||| ||||||||| ||||| ||||| | Sbjct 286 ACAATGGTCTAAACCCAGCTCATGTTCCCTATTACTGGGTGAACGATCCAGCGCTTGGGG 345 Query 120 AATTCTGCTTCGGTATGATAGG 141 || |||||||| |||||||| Sbjct 346 AAGTCTGCTTCACAATGATAGG 367 >seq1234 Length=898 Score = 132 bits (146), Expect = 8e-29 Identities = 82/88 (93%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 609 CCGACAGCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCACCACAAACCAGTT 668 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||||||| |||||| Sbjct 669 ATCCCTGTGGTAACTTTTCTGACACCTC 696 >seq11839 Length=56066 Score = 131 bits (144), Expect = 3e-28 Identities = 189/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| ||| |||||||||| ||||||||| | ||||||||||||||| |||| | Sbjct 46780 GTCATCAGGAGGTTAAAACTAACTTGTCTCATGGCAGTCTAAACCCAGCTCGTGTTCATT 46721 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||| || | | ||| ||| || ||||| || | ||| |||||| |||| Sbjct 46720 GTTAATGGGCGAGCTGACTAACACTTGGTGAGTTCTGGTTTGTGGTGACAGGAAGGGCCG 46661 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||| | | | ||| | ||| || |||| ||||| || | ||| || Sbjct 46660 ACATCAAAGGGT--TGAGGTAACTTTGCT---AATACTTGACTGCCGCAGGGTGGTTTTC 46606 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||||||||||| || |||| || | ||| | || | | | | |||| || Sbjct 46605 TCTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGAAAGTC-AGAAGATCCTGAG 46547 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||| |||| || || ||||||| Sbjct 46546 GCCGCACTAGCACGGCCTGTATTC 46523 >seq4307 Length=30386 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||||||||| ||| ||||||| || |||| || |||||||||||||||| Sbjct 13485 TCTTCAGTAGGGTAAAACGAACTTGTCTCACAACAGTCTGAAACCAGCTCACGTTCCCTG 13426 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 13425 TTAGTGGGGGAA 13414 >seq34921 Length=41212 Score = 84.2 bits (92), Expect = 4e-14 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||||||||| |||||||| || || ||| || |||| |||| || Sbjct 29230 TCATCAGCAGGGTAAAACTAACCTATCTCATGATGGCCT-AACGCAATTCACATTCCTTA 29172 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||| |||||||| |||| |||| ||||| Sbjct 29171 TTAGGGGGTGAACGGTCCAGTGCTTGGTGAATT 29139 >seq53127 Length=67082 Score = 80.6 bits (88), Expect = 5e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 31 TCATCAGTAG-GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||| ||||||||||||||||||||||| | ||| |||||||||||| |||||| Sbjct 10933 TCATCAGTAGAGGTAAAACTAACCTGTCTCATGATGATCT-AACCCAGCTCACATTCCCT 10991 Query 90 ATT 92 || Sbjct 10992 CTT 10994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853749041184