Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq29365 288 3e-75 seq45615 273 7e-71 seq6897 273 7e-71 seq64838 250 8e-64 seq50027 221 4e-55 seq41985 212 2e-52 seq41764 212 2e-52 seq61757 210 7e-52 seq34200 116 1e-23 seq54283 95.1 4e-17 seq1234 93.3 1e-16 seq40026 91.5 5e-16 seq43559 86.0 2e-14 >seq29365 Length=5581 Score = 288 bits (318), Expect = 3e-75 Identities = 182/196 (93%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| ||| |||||| | | | || ||||||||||||| Sbjct 4701 CTCCCACTTACTCTACACCTCTCATGTCTCTTCACAGCGCCAGGCT-GAGTCAAGCTCAA 4643 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4642 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 4583 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4582 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 4523 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||| ||| Sbjct 4522 ACGAGGCATTTGACTA 4507 >seq45615 Length=859 Score = 273 bits (302), Expect = 7e-71 Identities = 178/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||| ||||||| ||| |||||| | | ||||||| |||| |||| Sbjct 653 CTCCCACTTATTCTACGCCTCTCATGTCTCTTCACAGCGCCAGACTAGATTCAATCTCAG 712 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 713 CAGGGTCTTCTTTCCCCACTGATTCCGTCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 772 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 773 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTACTTAGAGG 832 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 833 ACGAGGCATTTGGCTA 848 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| | |||| ||||||| |||| ||| | ||||| ||||||||||||| | ||| Sbjct 374 TGCTCCGCGGGAGGTTTCTGTCCTCCCTGACCTCACCTTACGACACCTGCGTTACGCTTT 433 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| ||||||||| ||||||||||||||| | |||| Sbjct 434 GACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 476 >seq6897 Length=1202 Score = 273 bits (302), Expect = 7e-71 Identities = 178/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| ||| ||| || | | |||||||||||||||||| Sbjct 815 CTCCCACTTACTCTACACCTCTCATGTCTCTTCCCAGCGCCAGACTAGAGTCAAGCTCAA 874 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct 875 CAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCTTTGGCTGTGGTTTCGCTGG 934 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||||| Sbjct 935 ATAGTAGGTGGGGACAGTGGGAATCTTGTTCATCCATTCATGCATGTCACTAATTAGATG 994 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 995 ACGAGGCATTTGGCTA 1010 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||||| |||| || ||| |||| ||||||||||||||| ||| | Sbjct 548 CTTCTGCTCTGCAGGAGGTTTCCGTCCTCTCTGAGCTTGCCTTAGGACACCTGCCTTACG 607 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 || |||| ||| | ||||||| ||||||||||||||| || ||| Sbjct 608 CTTGGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCACTGT 653 >seq64838 Length=3435 Score = 250 bits (276), Expect = 8e-64 Identities = 173/196 (88%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| | ||||||||||| | | |||||| | |||||||||||||||||| Sbjct 1290 CTCCCACTTAGTGTACACCTCTCATGCCTCTTCACAGCACCAGACTAGAGTCAAGCTCAA 1349 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||||||||||| || ||||||||||||||||| || | Sbjct 1350 CAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCTGTGCCCTTGGCTGTGGTTTCACTGG 1409 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| ||||||||||||| ||||||||| || || Sbjct 1410 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCGTGTCACTAATCAGGTG 1469 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 1470 ATGAGGCATTTGGCTA 1485 >seq50027 Length=2005 Score = 221 bits (244), Expect = 4e-55 Identities = 167/196 (85%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| |||||||||||||||||| | | ||||| | ||||||||| |||||||| Sbjct 1275 CTCCAGCTTATTCTACACCTCTCATGCCTCTTCACTGCACCAGACTAGAGTTAAGCTCAA 1216 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||| | Sbjct 1215 CAGGGTCTT---TCCCCGCTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTTGCTGG 1159 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| ||||||||||||||||||| || | ||||||||| | |||| ||| |||||| Sbjct 1158 GTAGTAGGTAGGGACAGTGGGAATCTCATTCAGCCATTCATGTGTGTCAGTAAGTAGATG 1099 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 1098 ACGAGGCATTTGGCTA 1083 Score = 89.7 bits (98), Expect = 2e-15 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| | ||| ||||||| |||| |||| ||||||||||||||||||| | Sbjct 1566 CTTCTACTCCGCGGGAAGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCGTTA-G 1508 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||| ||| ||||||||| ||| ||||||||||| Sbjct 1507 CTTTAACAGGTGTACCGCCCCAGTCAAGCTCCCCACCTG 1469 >seq41985 Length=13964 Score = 212 bits (234), Expect = 2e-52 Identities = 333/474 (70%), Gaps = 57/474 (12%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||||| | ||||||||| || |||| |||| | |||||||| ||||| ||| Sbjct 12609 GATCTTACGCTCTGCGGGAGATTTCCGTCCTCCTTGAGCTCACCTTAGGATACCTGTGTT 12668 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG 123 ||||||| |||| ||| | ||||||| |||||||||||||||||| |||| || || Sbjct 12669 ATGGTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGACACTGTC-----CCTGG 12723 Query 124 ATCGGCCCGCGA-AGGACCTTAACGCCAGAAAATGG-----TCGGTGAAGA-CCAGTTCC 176 | | | | | ||| ||| | |||||| | | |||| ||| ||| Sbjct 12724 AGCAGGTCATGCCAGGCACTTGGCATCAGAAATGAGAGCCCTTTCTGAATCGCCACCTCC 12783 Query 177 GCT-----------TCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTT 224 | ||| || ||||| |||||| ||| || |||||||||||| Sbjct 12784 CCCCCCCCGCCACCTCACTGGGTAAGTGGAAAAAATGATCAG-----TGGTATTTCACTG 12838 Query 225 GC------------GCC-GA-------AAC-----GGC-TCCCACTTATTCTACACCTCT 258 || ||| || ||| ||| ||||| ||||||||||||||| Sbjct 12839 GCAATTGGACCATGGCCTGAGTTGCACAACCACAAGGCGTCCCATTTATTCTACACCTCT 12898 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 | ||| | | | | | || |||||| ||||||| |||||||||||||| ||||| Sbjct 12899 GATGTCTCTGTAGCAC--CAGGCTGGAGTCATGCTCAACGGGGTCTTCTTTCCCTGCTGA 12956 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||| |||| |||| |||||||||| || | |||| |||||||||||||| Sbjct 12957 TTCTGCCAAGCCTGTTCTCTTGACTGTGGTTTCACTGGCCAGTAAGTAGGGACAGTGGGA 13016 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||| | |||||||||||| | ||||||||| ||||| |||||||||||||| Sbjct 13017 ATCTCATGCATCCATTCATGCACATCACTAATTGGATGATGAGGCATTTGGCTA 13070 >seq41764 Length=7550 Score = 212 bits (234), Expect = 2e-52 Identities = 161/190 (85%), Gaps = 14/190 (7%) Strand=Plus/Minus Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||||||||| | | |||||| | | ||||||| |||| ||||||||||| Sbjct 7545 CTTATTCTACACCTCTCATGCC--TTCACAGTGCCAGACTAGAATCAAACTCAACAGGGT 7488 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||| |||||||||||||||| |||||| ||||||||||||||| |||||| Sbjct 7487 CTT---TCCCCGCTGATTCCGCAAAGCCCCTTCCCTTGGCTGTGG---------ATAGTA 7440 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 | ||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||| Sbjct 7439 GGTAGGGACAGCGGGAACCTCGTTCATCCATTCATGCGTGTCACTAATTAGATGACGAGG 7380 Query 423 CATTTGGCTA 432 |||||||||| Sbjct 7379 CATTTGGCTA 7370 >seq61757 Length=30183 Score = 210 bits (232), Expect = 7e-52 Identities = 163/196 (83%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||||||||||||| | ||| |||||| |||||||||||| Sbjct 26094 CTTCCACTTATTCTACACCTCTTATGTCTCTTCACAGC----------AGTCAAGCTCAA 26143 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| ||||||| ||||| |||| ||||||||| || | Sbjct 26144 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCCTTTGGTTGTGGTTTCACTGG 26203 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||||||||| ||||||| ||| |||||||||||| | |||||||||||||| Sbjct 26204 GTAGTAGGTAGGGACAGTAGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATG 26263 Query 417 ACGAGGCATTTGGCTA 432 || || |||||||||| Sbjct 26264 ACAAGACATTTGGCTA 26279 >seq34200 Length=854 Score = 116 bits (128), Expect = 1e-23 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| ||||||| |||| |||| | ||||||||||||||||||||| Sbjct 249 CTTCTGCTCTGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATG 190 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 189 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 151 >seq54283 Length=1887 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||||| |||| || |||| |||| | |||||||||||||||| || | Sbjct 592 CTTCTGCTCCACAGGACGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGCTA-G 650 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| |||||||| ||||||||||||||| | |||| Sbjct 651 CTTTGACAGGTGTATCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 697 >seq1234 Length=898 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 12 GCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTA 71 ||||| |||||| |||| | |||| ||| | ||||||||||||||||||| | ||| Sbjct 794 GCTCTGCAGGAGGTTTCCATCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTA-GCTTTG 852 Query 72 ACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA 114 |||| ||| | ||||||| ||||||||||||||| | ||||| Sbjct 853 ACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCGCTGTCA 895 >seq40026 Length=89039 Score = 91.5 bits (100), Expect = 5e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 || || |||| ||||||| |||| |||| | || ||||| |||||| ||| ||||| || Sbjct 11668 TCCACGGGAGGTTTCTGTCCTCCCTGAGCTCACCATAGGAGACCTGCCTTACGGTTTGAC 11609 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 | ||| || ||||||||||||||||||||||| Sbjct 11608 GGGTGTACCACCCCAGCCAAACTCCCCACCTGA 11576 >seq43559 Length=6125 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 6122 GGAATCTGCTTCATCCATTCATGCGTGTCACTAATTAGATGACGAGGCATTTGGCTA 6066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633954157472