Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq27164 77.0 5e-12 seq65203 75.2 2e-11 seq54194 73.4 6e-11 >seq27164 Length=34070 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| |||| || |||| || || | Sbjct 14837 GTACGAGAGGAACCGCAGG-TTCAGACCG-TGGGTGCGTGCGTTTGGCTGAGTAGCCACT 14780 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| | ||||||||| || ||||| ||||||||||||||||||||| || Sbjct 14779 GGTGCGAGGTGACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAAGCC 14726 >seq65203 Length=936 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 |||||||||||| || ||| | ||| | |||| || |||| || ||||| | | Sbjct 606 GAGGAACCGCGGGTTT-AGAGCCCT-GGTGTGTGCGTTTGGCTGAGGAGCCAGTGGCACA 549 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||| |||||||| || || || |||||||||||||||||||||||| Sbjct 548 AGGCTCCCATCTGCGGGCTTCTGACTGAACGCCTCTAAGTCAGAATCC 501 >seq54194 Length=25982 Score = 73.4 bits (80), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| || | |||||| | ||| |||| || |||| || || | Sbjct 21231 GTATGAGAGGAACTGCAGG-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 21288 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | ||| | ||||||||||| || ||||| |||||||||| ||||||||||||| |||| Sbjct 21289 GGCGCAAGGCTACCATCTGTGGGCTTATGACTGAACGCCTGTAAGTCAGAATCC-TGCC 21346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818595364096