Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq35785 134 1e-26
seq23705 104 2e-17
seq29696 91.5 1e-13
seq75432 86.0 5e-12
>seq35785
Length=10255
Score = 134 bits (148), Expect = 1e-26
Identities = 129/162 (80%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| ||
Sbjct 9802 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 9743
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||| ||||| || ||||| | || ||||||| ||||||||| ||||| ||||| ||
Sbjct 9742 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTG 9683
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|||||||||||||||| || ||||| || | |||||||||
Sbjct 9682 AGACTCAATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 9643
Score = 98.7 bits (108), Expect = 8e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || |
Sbjct 8426 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 8367
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||||||| |||||||
Sbjct 8366 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8308
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 8307 AGATGGCAAA--AGCCC 8293
>seq23705
Length=12823
Score = 104 bits (114), Expect = 2e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || ||||||||||| ||||| ||||
Sbjct 5425 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 5484
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| |||||||| ||||||||||||||||| | ||||| || || |||||||
Sbjct 5485 TTCTCATTGAGAATGTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 5541
>seq29696
Length=9771
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||||| | || || ||||||||||| ||||||||||
Sbjct 9093 TGGAGCGGTTCAGTCAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 9034
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||||||||| ||| | || || || |||||||| |||| || || || |||||
Sbjct 9033 TTGCCATGGAAAATATACATTCAGAAATGTACAGCCTTCTTATTGACACCTACAT 8979
>seq75432
Length=1733
Score = 86.0 bits (94), Expect = 5e-12
Identities = 135/188 (72%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740
|| ||| ||| | |||||||||||||| |||||||| || | || || ||||||||
Sbjct 1141 TCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 1082
Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798
||||| ||||| | | | | ||| | | ||||| || || | || |||| ||
Sbjct 1081 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGGTACCTCA 1024
Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858
||| || |||| ||||||||||| || || ||||| || ||||||||||| || |
Sbjct 1023 TCAAGATGAAAGCATCGGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 964
Query 65859 TGGAACGT 65866
|||| |||
Sbjct 963 TGGAGCGT 956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397198836866960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |