Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq28443 75.2 2e-11 >seq28443 Length=2728 Score = 75.2 bits (82), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2177 CTTCTTAGAGGGACAAATGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 2234 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC--GAGTTCAT 188 ||||||||||| ||| ||| || || || ||||||||| | || | | ||| | Sbjct 2235 GTGCCCTTAGATCTTCATAGCCACAGGCACGTTACACTGACTGGCTCAGCTTGTGTTTA- 2293 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 || || | || ||| ||||| | | || | | || || ||||||| ||| || Sbjct 2294 CA-CTCCACTGGCAGGCGCAGGTAACCCGTTGAACCCCATTCATGATGGGGATTGAGGAT 2352 Query 249 TGCAATTATTGCTCTTCAACGAG 271 ||||||| || | | | |||||| Sbjct 2353 TGCAATTCTTCCCCGTGAACGAG 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944278077440