Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq108086 132 2e-28 seq19410 104 8e-20 seq285389 87.8 6e-15 seq1778 86.0 2e-14 seq285716 75.2 4e-11 >seq108086 Length=1099 Score = 132 bits (146), Expect = 2e-28 Identities = 90/101 (89%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||| Sbjct 517 CCTTAAGAAAGTCATAGTTACTCCCGCTGTTTACCCATGCTTCACTGAATTTCTTCACTT 576 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| ||||||||| | |||||| Sbjct 577 TGACATTCAGAGCACTGGGCACAAATCACATCACATCAACA 617 >seq19410 Length=577 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||||| ||||||| |||| ||| | ||||||||||||||||||||| Sbjct 373 CTTCTGCTCCGCAGGAGGTTTCTGTCCTCCCTGAACTCACCTTAGGACACCTGCGTTATG 432 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||| ||||| | |||| Sbjct 433 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCTACCTGCCGCTGTC 479 >seq285389 Length=938 Score = 87.8 bits (96), Expect = 6e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||| || ||||||||| || ||| |||||||||||||||| Sbjct 876 CCTTAAGAGAGTCATAGTTACTTCCACCGTTTACCTGCACTTCATTGAATTTCTTCACTT 935 Query 493 TGA 495 ||| Sbjct 936 TGA 938 >seq1778 Length=539 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||| |||| || |||| |||| | ||||||||||||| || | Sbjct 201 CTTCTGCTCTGTGGGAGGTTTCCGTCCTCCCTGAGCTCGTCTTAGGACACCTGTGTCACA 260 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| |||||||| |||||| || |||| Sbjct 261 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCTCACCTGCCACTGTC 307 >seq285716 Length=949 Score = 75.2 bits (82), Expect = 4e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||| |||||| || ||||||||||| |||||| |||| |||||||| Sbjct 410 TGAATTTCTTCACTT-GACATTTAGGGCACTGGGCAGCAATCACTTTGCATCAACATC 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630155735040