Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq255806 107 6e-21 seq19678 104 7e-20 >seq255806 Length=442 Score = 107 bits (118), Expect = 6e-21 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||||||| | | | |||||||||||||||||||||| ||| Sbjct 1 GAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATGCATGGCTTAAGCTT 60 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||| Sbjct 61 TGAGACAAGCATATG-CTACTGGCAG 85 >seq19678 Length=281 Score = 104 bits (114), Expect = 7e-20 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||| | ||||||||||||||||||||| | |||| |||||||| ||||||| Sbjct 170 TGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGT-GCAGCCATTTCTCAGCCTCCCTC 228 Query 135 TCCGGAATCGAACCCTAATTCCCC 158 ||| ||||| |||||| |||||| Sbjct 229 TCCAGAATCAAACCCTGCTTCCCC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505740718080