Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq50941 170 3e-40 >seq50941 Length=2365 Score = 170 bits (188), Expect = 3e-40 Identities = 191/252 (76%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| || || || ||| ||| ||||||||||| ||||||||||||||||| | Sbjct 970 GTCAGTGTAACGTGCCTGTGGCTATGAAGATCTAAGGGCACCACAGACCTGTTATTGC-T 912 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | || || | || Sbjct 911 CAATCT-CAGGTGGCTGAATGCCATTTGTCCCTCTAAGAAGTTGGAAACAGAC--TGCTC 855 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | | || ||| |||| ||||||||||||| Sbjct 854 G--GGGGTTGTGTAACTAGTTAGCATGCCAGATTTTCATTCATTATTGGAATTAACCAGA 797 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||||||| ||||| ||| |||||||||| ||||||| ||| | |||||||||| Sbjct 796 CAAATTGCTCCACCGACTAAAAACAGCCATGCACCTCCACCCACAGATTTAAGAAAGAGC 737 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 736 TCTCAATCTGTC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795575728005