Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq50941 170 3e-40
>seq50941
Length=2365
Score = 170 bits (188), Expect = 3e-40
Identities = 191/252 (76%), Gaps = 14/252 (6%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||| || || || ||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 970 GTCAGTGTAACGTGCCTGTGGCTATGAAGATCTAAGGGCACCACAGACCTGTTATTGC-T 912
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | |||| | |||||||||||||| | || || | ||
Sbjct 911 CAATCT-CAGGTGGCTGAATGCCATTTGTCCCTCTAAGAAGTTGGAAACAGAC--TGCTC 855
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | | || ||| |||| |||||||||||||
Sbjct 854 G--GGGGTTGTGTAACTAGTTAGCATGCCAGATTTTCATTCATTATTGGAATTAACCAGA 797
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
||||| ||||||| ||||| ||| |||||||||| ||||||| ||| | ||||||||||
Sbjct 796 CAAATTGCTCCACCGACTAAAAACAGCCATGCACCTCCACCCACAGATTTAAGAAAGAGC 737
Query 247 TATCAATCTGTC 258
| ||||||||||
Sbjct 736 TCTCAATCTGTC 725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795575728005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |