Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq15039 275 1e-71
seq58196 271 1e-70
seq30675 149 1e-33
seq83187 73.4 7e-11
>seq15039
Length=5090
Score = 275 bits (304), Expect = 1e-71
Identities = 217/260 (83%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||
Sbjct 2535 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCAAATTCACGTTCCCTATT 2476
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||
Sbjct 2475 AGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGAGAGGAAGAGCCGACA 2416
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
| ||| ||||||| |||| || |||||||||||||||| |||||||||||||||||||
Sbjct 2415 TTGAAAGATCAAAGAGCAGTGTTGCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCT 2356
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272
||||||||||||||| |||||| || | ||| | | | |||||| |||||
Sbjct 2355 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGGAGGATCATGAGGCC 2296
Query 273 ACACTTTCATGGTTTGTATT 292
| |||||| ||| ||||||
Sbjct 2295 CCGCTTTCACGGTCTGTATT 2276
>seq58196
Length=6548
Score = 271 bits (300), Expect = 1e-70
Identities = 218/263 (83%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 1770 TCATCAGTCGGGTAAAACTAACCTGTCTCATGACAGTCTAAACCCATCTCACATTCCCTA 1829
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||| |||||||||||||||| || |||||||||||| |||| |||||||||| |
Sbjct 1830 TTAATGGGTGAACAATCCAAACTTTCGTGAATTCTGCTTCACAATGAAAGGAAGAGCCAA 1889
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| ||||||||||||||| | ||| ||||||||||||| | ||||||||||||||||||
Sbjct 1890 CATTGAAGGATCAAAAAGCGATGTCACTATGAACGCTTGCCCGCCACAAGCCAGTTATCC 1949
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||| ||||||||||| |||||| || | ||| | | | ||||||| |||
Sbjct 1950 CTGTGATAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCATGAGG 2009
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| |||||||| || |||||||
Sbjct 2010 CCCCACTTTCACCGTCTGTATTC 2032
>seq30675
Length=11351
Score = 149 bits (164), Expect = 1e-33
Identities = 163/212 (77%), Gaps = 10/212 (5%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCA---TGA-CGGTCTAAACCCAGCTCACGTTC 86
||||||||||| |||| | | ||||||||| ||| | ||||| |||||||||| | |
Sbjct 2630 TCATCAGTAGG-TAAAGCCACCCTGTCTCACAGTGATCTATCTAATCCCAGCTCACATCC 2572
Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146
|||| | | ||| |||||||| |||| |||||||||||| ||| |||| |||
Sbjct 2571 CCTACCACAAG-TGAGCAATCCAATGCTTGGTGAATTCTGCTTCCCAGTGACAGGATGAG 2513
Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCT----ATGAACGCTTGGCTGCCACAAGCC 202
| || || | | |||||||||||| | ||| |||||| ||||||| |||||||||
Sbjct 2512 CTGAGATGGCACAGTCAAAAAGCAACATTGCTGTGAATGAACACTTGGCTACCACAAGCC 2453
Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| | ||||||||||||||| ||| ||||||
Sbjct 2452 AGTCACCCCTGTGGTAACTTTCCTGACACCTC 2421
>seq83187
Length=15513
Score = 73.4 bits (80), Expect = 7e-11
Identities = 68/85 (80%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||| || | |||||||||||||| || | | || ||| || | || || |||||||
Sbjct 10634 TCATCAATAAGATAAAACTAACCTGTTTCTTCATGGCCTACTCCAA-CTAACATTCCCTA 10692
Query 91 TTAGTGGGTGAACAATCCAACGCTT 115
|||||||||||||| |||| | |||
Sbjct 10693 TTAGTGGGTGAACAGTCCAGCACTT 10717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853044878880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |