Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15039 275 1e-71 seq58196 271 1e-70 seq30675 149 1e-33 seq83187 73.4 7e-11 >seq15039 Length=5090 Score = 275 bits (304), Expect = 1e-71 Identities = 217/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||| Sbjct 2535 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCAAATTCACGTTCCCTATT 2476 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||||| |||| |||||||||||| |||| |||||||||||||| Sbjct 2475 AGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGAGAGGAAGAGCCGACA 2416 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | ||| ||||||| |||| || |||||||||||||||| ||||||||||||||||||| Sbjct 2415 TTGAAAGATCAAAGAGCAGTGTTGCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCT 2356 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||| || | ||| | | | |||||| ||||| Sbjct 2355 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGGAGGATCATGAGGCC 2296 Query 273 ACACTTTCATGGTTTGTATT 292 | |||||| ||| |||||| Sbjct 2295 CCGCTTTCACGGTCTGTATT 2276 >seq58196 Length=6548 Score = 271 bits (300), Expect = 1e-70 Identities = 218/263 (83%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 1770 TCATCAGTCGGGTAAAACTAACCTGTCTCATGACAGTCTAAACCCATCTCACATTCCCTA 1829 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| |||||||||||||||| || |||||||||||| |||| |||||||||| | Sbjct 1830 TTAATGGGTGAACAATCCAAACTTTCGTGAATTCTGCTTCACAATGAAAGGAAGAGCCAA 1889 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||||||||||| | ||| ||||||||||||| | |||||||||||||||||| Sbjct 1890 CATTGAAGGATCAAAAAGCGATGTCACTATGAACGCTTGCCCGCCACAAGCCAGTTATCC 1949 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| |||||| || | ||| | | | ||||||| ||| Sbjct 1950 CTGTGATAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCATGAGG 2009 Query 271 CCACACTTTCATGGTTTGTATTC 293 || |||||||| || ||||||| Sbjct 2010 CCCCACTTTCACCGTCTGTATTC 2032 >seq30675 Length=11351 Score = 149 bits (164), Expect = 1e-33 Identities = 163/212 (77%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCA---TGA-CGGTCTAAACCCAGCTCACGTTC 86 ||||||||||| |||| | | ||||||||| ||| | ||||| |||||||||| | | Sbjct 2630 TCATCAGTAGG-TAAAGCCACCCTGTCTCACAGTGATCTATCTAATCCCAGCTCACATCC 2572 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||| | | ||| |||||||| |||| |||||||||||| ||| |||| ||| Sbjct 2571 CCTACCACAAG-TGAGCAATCCAATGCTTGGTGAATTCTGCTTCCCAGTGACAGGATGAG 2513 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCT----ATGAACGCTTGGCTGCCACAAGCC 202 | || || | | |||||||||||| | ||| |||||| ||||||| ||||||||| Sbjct 2512 CTGAGATGGCACAGTCAAAAAGCAACATTGCTGTGAATGAACACTTGGCTACCACAAGCC 2453 Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| | ||||||||||||||| ||| |||||| Sbjct 2452 AGTCACCCCTGTGGTAACTTTCCTGACACCTC 2421 >seq83187 Length=15513 Score = 73.4 bits (80), Expect = 7e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || | |||||||||||||| || | | || ||| || | || || ||||||| Sbjct 10634 TCATCAATAAGATAAAACTAACCTGTTTCTTCATGGCCTACTCCAA-CTAACATTCCCTA 10692 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||||||||||||| |||| | ||| Sbjct 10693 TTAGTGGGTGAACAGTCCAGCACTT 10717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853044878880