Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq58196 257 5e-66 seq15039 239 1e-60 seq33891 77.0 1e-11 >seq58196 Length=6548 Score = 257 bits (284), Expect = 5e-66 Identities = 180/205 (88%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| || |||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 2347 CTCCCACTTATTTTATACCTCTCATGTCTTTTCAAAGTGCCAGACTAGAGTCAAGCTCAA 2406 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| | Sbjct 2407 CAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTCGTTTTGCTGG 2466 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| |||||| |||||||||| |||||||||||| | |||||||||||||| Sbjct 2467 ATAGTAGGTAGAGACAGTCAGAATCTCGTTCATCCATTCATGCACATCACTAATTAGATG 2526 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 | || ||||||||||| ||| ||| Sbjct 2527 ATGAAGCATTTGGCTATTTTATGAG 2551 Score = 132 bits (146), Expect = 2e-28 Identities = 90/101 (89%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||| Sbjct 5969 CCTTAAGAAAGTCATAGTTACTCCCGCTGTTTACCCATGCTTCACTGAATTTCTTCACTT 6028 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| ||||||||| | |||||| Sbjct 6029 TGACATTCAGAGCACTGGGCACAAATCACATCACATCAACA 6069 Score = 107 bits (118), Expect = 6e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| ||| | ||||||||||||||||||||| Sbjct 2066 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAACTCACCTTAGGACACCTGCGTTATG 2125 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| || |||||| ||||||||| ||||| Sbjct 2126 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCTACCTG 2164 >seq15039 Length=5090 Score = 239 bits (264), Expect = 1e-60 Identities = 176/205 (86%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| || |||||| | | |||||||||||||||||| Sbjct 1954 CTCCCACTTATTCTACACCTCTCACTTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 1895 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || || | Sbjct 1894 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCCCTTGGCTGTGGTCTCACTGG 1835 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||| || ||||||| |||||| || |||||||||| | | |||||||||||||| Sbjct 1834 ATACTAGGTAAGGACAGTATGAATCTTATTCATCCATTCATACACATCACTAATTAGATG 1775 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 | |||||||||||||| ||| ||| Sbjct 1774 ATGAGGCATTTGGCTATTTTATGAG 1750 Score = 122 bits (134), Expect = 3e-25 Identities = 94/109 (86%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||| || ||||||||| || ||| |||||||||||||||| Sbjct 910 CCTTAAGAGAGTCATAGTTACTTCCACCGTTTACCTGCACTTCATTGAATTTCTTCACTT 851 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA-TCACTTT 540 ||||||||||| ||||||| | |||| ||| | | |||||| |||||| Sbjct 850 TGACATTCAGAACACTGGGTACAAATTACA-TCCATCAACACCCACTTT 803 Score = 84.2 bits (92), Expect = 7e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||| |||| || |||| |||| | |||||||||||||||| | Sbjct 2241 CTTCTGCTCTGTGGGAGGTTTCCGTCCTCCCTGAGCTCGTCTTAGGACACCTGCGTCACA 2182 Query 67 GTTTAACAGATGT-GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| |||||||| |||||| || |||| Sbjct 2181 CTTTGACAGGTGTAACCGCCCCAGTCAAACTCCTCACCTGCCACTGTC 2134 >seq33891 Length=15676 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||| || | || ||||| || |||| || ||| |||||||||||||||| Sbjct 14088 CTTAAGAGAATCCCAAGTCACTCCA-CCACTTACT-GCACTTCATTGAATTTCTTCACTT 14145 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||| || ||||||||||| |||||| | || |||||||| Sbjct 14146 -GACATTTAGGGCACTGGGCAGCAATCACTTCGCATCAACATC 14187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632606491040