Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq58196 257 5e-66
seq15039 239 1e-60
seq33891 77.0 1e-11
>seq58196
Length=6548
Score = 257 bits (284), Expect = 5e-66
Identities = 180/205 (88%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||| || |||||||| ||| ||||| | | | ||||||||||||||||||
Sbjct 2347 CTCCCACTTATTTTATACCTCTCATGTCTTTTCAAAGTGCCAGACTAGAGTCAAGCTCAA 2406
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 2407 CAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTCGTTTTGCTGG 2466
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||| |||||| |||||||||| |||||||||||| | ||||||||||||||
Sbjct 2467 ATAGTAGGTAGAGACAGTCAGAATCTCGTTCATCCATTCATGCACATCACTAATTAGATG 2526
Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441
| || ||||||||||| ||| |||
Sbjct 2527 ATGAAGCATTTGGCTATTTTATGAG 2551
Score = 132 bits (146), Expect = 2e-28
Identities = 90/101 (89%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 5969 CCTTAAGAAAGTCATAGTTACTCCCGCTGTTTACCCATGCTTCACTGAATTTCTTCACTT 6028
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||| ||||||||| | ||||||
Sbjct 6029 TGACATTCAGAGCACTGGGCACAAATCACATCACATCAACA 6069
Score = 107 bits (118), Expect = 6e-21
Identities = 83/99 (84%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| ||||||| ||||||| |||| ||| | |||||||||||||||||||||
Sbjct 2066 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAACTCACCTTAGGACACCTGCGTTATG 2125
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105
||| |||| ||| || |||||| ||||||||| |||||
Sbjct 2126 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCTACCTG 2164
>seq15039
Length=5090
Score = 239 bits (264), Expect = 1e-60
Identities = 176/205 (86%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| || |||||| | | ||||||||||||||||||
Sbjct 1954 CTCCCACTTATTCTACACCTCTCACTTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 1895
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || || |
Sbjct 1894 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCCCTTGGCTGTGGTCTCACTGG 1835
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||| ||| || ||||||| |||||| || |||||||||| | | ||||||||||||||
Sbjct 1834 ATACTAGGTAAGGACAGTATGAATCTTATTCATCCATTCATACACATCACTAATTAGATG 1775
Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441
| |||||||||||||| ||| |||
Sbjct 1774 ATGAGGCATTTGGCTATTTTATGAG 1750
Score = 122 bits (134), Expect = 3e-25
Identities = 94/109 (86%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||| || ||||||||| || ||| ||||||||||||||||
Sbjct 910 CCTTAAGAGAGTCATAGTTACTTCCACCGTTTACCTGCACTTCATTGAATTTCTTCACTT 851
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA-TCACTTT 540
||||||||||| ||||||| | |||| ||| | | |||||| ||||||
Sbjct 850 TGACATTCAGAACACTGGGTACAAATTACA-TCCATCAACACCCACTTT 803
Score = 84.2 bits (92), Expect = 7e-14
Identities = 84/108 (78%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| |||||| |||| |||| || |||| |||| | |||||||||||||||| |
Sbjct 2241 CTTCTGCTCTGTGGGAGGTTTCCGTCCTCCCTGAGCTCGTCTTAGGACACCTGCGTCACA 2182
Query 67 GTTTAACAGATGT-GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| ||||||||| |||||||| |||||| || ||||
Sbjct 2181 CTTTGACAGGTGTAACCGCCCCAGTCAAACTCCTCACCTGCCACTGTC 2134
>seq33891
Length=15676
Score = 77.0 bits (84), Expect = 1e-11
Identities = 82/103 (80%), Gaps = 4/103 (4%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||| || | || ||||| || |||| || ||| ||||||||||||||||
Sbjct 14088 CTTAAGAGAATCCCAAGTCACTCCA-CCACTTACT-GCACTTCATTGAATTTCTTCACTT 14145
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||| || ||||||||||| |||||| | || ||||||||
Sbjct 14146 -GACATTTAGGGCACTGGGCAGCAATCACTTCGCATCAACATC 14187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1632606491040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |