Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq58196 91.5 2e-16 seq15039 78.8 2e-12 >seq58196 Length=6548 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||| ||| || |||| || || | Sbjct 1741 GTACGAGAGGAACCGCAGA-TTCAGACCCCT-GGTGCATGCACTTGGCTGAGGAGCCACT 1684 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| |||||||||||| || ||||| ||||| |||||||||||||||||| Sbjct 1683 GGCGCGAGGCTACCATCTGCAGGCTTATGACTGAATGCCTCTAAGTCAGAATCC 1630 >seq15039 Length=5090 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||| |||| | | |||||| | |||| |||| || |||| || || | Sbjct 2566 GTAGGAGAGAAACCACAGG-TTCAGA-TCCCTGGTGCGTGCGCTTGGCTGAGGAGCCACT 2623 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || | |||||||||||| || ||||| |||||||||||||||||||||||| |||| Sbjct 2624 GGTGCAAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 2681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817941310720