Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq58196 91.5 2e-16
seq15039 78.8 2e-12
>seq58196
Length=6548
Score = 91.5 bits (100), Expect = 2e-16
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| | ||| ||| || |||| || || |
Sbjct 1741 GTACGAGAGGAACCGCAGA-TTCAGACCCCT-GGTGCATGCACTTGGCTGAGGAGCCACT 1684
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||| |||||||||||| || ||||| ||||| ||||||||||||||||||
Sbjct 1683 GGCGCGAGGCTACCATCTGCAGGCTTATGACTGAATGCCTCTAAGTCAGAATCC 1630
>seq15039
Length=5090
Score = 78.8 bits (86), Expect = 2e-12
Identities = 91/119 (76%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||| |||| | | |||||| | |||| |||| || |||| || || |
Sbjct 2566 GTAGGAGAGAAACCACAGG-TTCAGA-TCCCTGGTGCGTGCGCTTGGCTGAGGAGCCACT 2623
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
| || | |||||||||||| || ||||| |||||||||||||||||||||||| ||||
Sbjct 2624 GGTGCAAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 2681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 817941310720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |