Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq138998 132 1e-28
seq18187 98.7 3e-18
>seq138998
Length=310
Score = 132 bits (146), Expect = 1e-28
Identities = 96/110 (87%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||||| ||||||||||| | | | ||
Sbjct 31 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCCGTTTCACTGTACCGCCCGTGTGTA 90
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 91 CTTAGACATGCATGGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 139
>seq18187
Length=418
Score = 98.7 bits (108), Expect = 3e-18
Identities = 73/84 (87%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
|||||||||||| | |||||||||||||||| |||| | |||| |||||||| |||||||
Sbjct 307 TGGGTAATTTGCACACCTGCTGCCTTCCTTGAATGT-GCAGCCATTTCTCAGCCTCCCTC 365
Query 135 TCCGGAATCGAACCCTAATTCCCC 158
||| ||||| |||||| ||||||
Sbjct 366 TCCAGAATCAAACCCTGCTTCCCC 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1508004430080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |