Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq138998 132 1e-28 seq18187 98.7 3e-18 >seq138998 Length=310 Score = 132 bits (146), Expect = 1e-28 Identities = 96/110 (87%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||| ||||||||||| | | | || Sbjct 31 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCCGTTTCACTGTACCGCCCGTGTGTA 90 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 91 CTTAGACATGCATGGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 139 >seq18187 Length=418 Score = 98.7 bits (108), Expect = 3e-18 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||| | |||||||||||||||| |||| | |||| |||||||| ||||||| Sbjct 307 TGGGTAATTTGCACACCTGCTGCCTTCCTTGAATGT-GCAGCCATTTCTCAGCCTCCCTC 365 Query 135 TCCGGAATCGAACCCTAATTCCCC 158 ||| ||||| |||||| |||||| Sbjct 366 TCCAGAATCAAACCCTGCTTCCCC 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508004430080