Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq33192 120 2e-22
seq17341 95.1 1e-14
seq36611 93.3 3e-14
seq109629 89.7 4e-13
seq108171 86.0 5e-12
>seq33192
Length=1908
Score = 120 bits (132), Expect = 2e-22
Identities = 126/162 (78%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| ||
Sbjct 1548 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1607
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| | ||||| | |||||||| | |||||| || ||||| |||||| ||
Sbjct 1608 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTG 1667
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|||||| |||||||||| || ||||| || | |||||||||
Sbjct 1668 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 1707
>seq17341
Length=11243
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || ||||||||||| ||||| ||||
Sbjct 4688 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 4629
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| ||||| || ||||| ||||||||||| | ||||| || || |||||||
Sbjct 4628 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 4572
>seq36611
Length=16847
Score = 93.3 bits (102), Expect = 3e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | || || ||||||||||| ||||||||||
Sbjct 1177 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 1236
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|||||||||| ||| | || || || ||||||||| |||| || || || ||||| | ||
Sbjct 1237 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACTTACATTAAGG 1296
Query 61376 A 61376
|
Sbjct 1297 A 1297
Score = 87.8 bits (96), Expect = 1e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
||||| || || || ||||| | ||||||||| |||| | || || |||| ||||||
Sbjct 347 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 406
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| ||||| || || ||||||||||||| |||||||||
Sbjct 407 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 444
>seq109629
Length=3266
Score = 89.7 bits (98), Expect = 4e-13
Identities = 104/137 (76%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| |||||||| || |||| || || | ||||| ||||| || |
Sbjct 966 CATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCCTT 1025
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || || ||| ||||||||||||||||| ||||| || |||||||
Sbjct 1026 CCCTGTG-TTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 1084
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 1085 AGATGGCAAA--AGCCC 1099
>seq108171
Length=529
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/214 (69%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 65657 CTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG 65716
||| |||| || || || | | ||||| |||| |||| |||| || | |||||||
Sbjct 273 CTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTG 214
Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776
| ||| || || | | ||||||||||| || ||| | | || || | ||||
Sbjct 213 GCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGG 154
Query 65777 TCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATA 65836
|||||||| | || | | |||||||| || | ||||||||| || || || || ||
Sbjct 153 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 94
Query 65837 CCGATGGGACGATGACGCAAATTGGAACGTCTCG 65870
|||||||| || || ||| ||||| || ||||
Sbjct 93 CCGATGGGGCGGTGCCGCCGGTTGGAGCG-CTCG 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396799501677200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |