Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33192 120 2e-22 seq17341 95.1 1e-14 seq36611 93.3 3e-14 seq109629 89.7 4e-13 seq108171 86.0 5e-12 >seq33192 Length=1908 Score = 120 bits (132), Expect = 2e-22 Identities = 126/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 1548 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1607 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| |||||| || Sbjct 1608 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTG 1667 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 1668 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 1707 >seq17341 Length=11243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 4688 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 4629 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 4628 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 4572 >seq36611 Length=16847 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 1177 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 1236 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| | || Sbjct 1237 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACTTACATTAAGG 1296 Query 61376 A 61376 | Sbjct 1297 A 1297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 347 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 406 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 407 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 444 >seq109629 Length=3266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 966 CATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCCTT 1025 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || ||| ||||||||||||||||| ||||| || ||||||| Sbjct 1026 CCCTGTG-TTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 1084 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 1085 AGATGGCAAA--AGCCC 1099 >seq108171 Length=529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 65657 CTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG 65716 ||| |||| || || || | | ||||| |||| |||| |||| || | ||||||| Sbjct 273 CTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTG 214 Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776 | ||| || || | | ||||||||||| || ||| | | || || | |||| Sbjct 213 GCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGG 154 Query 65777 TCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATA 65836 |||||||| | || | | |||||||| || | ||||||||| || || || || || Sbjct 153 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 94 Query 65837 CCGATGGGACGATGACGCAAATTGGAACGTCTCG 65870 |||||||| || || ||| ||||| || |||| Sbjct 93 CCGATGGGGCGGTGCCGCCGGTTGGAGCG-CTCG 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396799501677200