Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq142414 116 2e-20 >seq142414 Length=368 Score = 116 bits (128), Expect = 2e-20 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| |||||| || ||||||||||||| ||||||||| ||||||| Sbjct 119 CTCCTTGAGGCGGGGCACGCCCAGCGTGACGTTCTTGGCCGAGACGCCGGCGTAGTGGAA 178 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| |||||||| | |||| | || || ||| || Sbjct 179 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCGCCCAGCGACTGCGCGGCCAGCGCGCCCAC 238 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 239 CATCTCCCCGGG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2080399417951790