Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2853 131 3e-28 seq523 118 2e-24 >seq2853 Length=1972243 Score = 131 bits (144), Expect = 3e-28 Identities = 174/235 (74%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || || |||||| ||||| | | ||| || |||||| | Sbjct 237936 GTACAAAGGGCAGGGACTTAAGCAGCGTGAGCTT-ATGACCCACACTTGCTGGGAATT-C 237993 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 |||||| | || || || |||||| | ||||||||||||| ||||| | | Sbjct 237994 CTCGTTCACAGGGGAAAAAATGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGT 238053 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| |||| | || ||| | || | ||| ||||||||||| |||||| Sbjct 238054 TACCCATGCCTGCCAGCAGAGGGTACGCACAAGCTGAGCCAGTCAGTGTAGCGTGCGTGC 238113 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| | ||||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 238114 GGCCCCGGACATCTAAGGGCATCACAGACTTGTTATTG-CTCAATCTCAGGTGGC 238167 >seq523 Length=1156184 Score = 118 bits (130), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 |||||| || |||| | |||| ||||| || ||||||||||||| |||| || | | Sbjct 1608 AGGGACTTAATCAATGAACGCTT-ATGACCTGCACTTACTAGGAATT-CCTCATTCACGG 1551 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA-TTACCCGGA 126 |||||||||||| ||||||||||| |||| ||||| | ||||||| Sbjct 1550 GGAACAATTGCAATCCCTGATCCCCATCAC----AAATGGGGTTCAATGGGTTACCCGTG 1495 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 |||| |||| ||| | || | ||| | ||||||||||||||||||||| Sbjct 1494 CCTGCCGGCGGAGGGTAGGCACAAGCTGAGCCAGTTAGTGTAGCGCGCGTGCGGCCCCAG 1435 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||| |||||||| ||||| || Sbjct 1434 ACATCTAAGGGCATCACAGACGTGTTATTG-CTCAATCT 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751772314610