Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq248 129 1e-27 >seq248 Length=537846 Score = 129 bits (142), Expect = 1e-27 Identities = 198/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||||||||| ||||||||||||| Sbjct 1307 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCTAAACATTTACTTTGAGAAAATTAGAGTGT 1248 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| || | |||| ||| |||||||| ||||||||| | ||||| Sbjct 1247 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 1189 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || |||||||||||| || | | | |||||||| ||||| | | |||| | || Sbjct 1188 CTGTTTTGTTGGTTTTCAGAAACAGGGCCATGATTAAGAGGGACGGCCAGGGGCATTCGT 1129 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||| ||||||||| | ||||| ||| | |||| | || Sbjct 1128 ATTGTGCTTCTAGAGGTAAAATTCTTGAACCGGCACAAGACAGCCTAGAGTGAAAACATT 1069 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||| |||||||| |||| ||| || Sbjct 1068 TGCCAAGAATGTTTTGATTAATCA-AGAACAAAATTT 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914913963392