Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3604 123 1e-26 seq4140 104 1e-20 seq2987 95.1 6e-18 >seq3604 Length=4465232 Score = 123 bits (136), Expect = 1e-26 Identities = 86/98 (88%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||||| | ||||||| ||| |||||||||| | Sbjct 371093 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACTGTGAGTGAAGAGGAAAGAGCCCAGAG 371152 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 | ||||||||| |||| | ||||| | ||||||||||| Sbjct 371153 CAGAATCCCCGTCCCGTGATGGGGTGTGGGACATGTGG 371190 >seq4140 Length=181117 Score = 104 bits (114), Expect = 1e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| ||| |||||||||||||||| || |||||| ||||||||||||||| Sbjct 165413 GGAAAAGAAATTAATAAGGATTCCCTCAGTAATGGGAAGTGAAAAGGGAAGAGCCCAGCA 165472 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||| | |||| || |||||| | |||||||| | ||| Sbjct 165473 CTGAATCACTGCCCTGCAATGGGGCACAGGACATGTAGTGTA 165514 >seq2987 Length=150071 Score = 95.1 bits (104), Expect = 6e-18 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 26 TCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGC 85 ||||||||| |||||| ||||| |||||||||||| ||||||| ||| ||||||||| Sbjct 81881 TCAGTAACG---AGTGAAGAGGGAGGAGCCCAGCGCCAAATCCCCACCCTGCGGTGGGGG 81825 Query 86 GCGGGACATGTGGCGT 101 |||||||||||||||| Sbjct 81824 GCGGGACATGTGGCGT 81809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230332491360