Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2853 206 4e-51 seq248 149 1e-33 seq606 116 6e-24 seq511 113 7e-23 seq498 100 5e-19 seq36 100 5e-19 seq523 93.3 7e-17 seq2750 78.8 1e-12 >seq2853 Length=1972243 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||| | Sbjct 238095 GTCAGTGTAGCGTGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACTTGTTATTGC-T 238153 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--CA-GCC-ACCAACCAT 130 ||| || | |||||| | |||| | |||||||||||||| || ||| ||| | Sbjct 238154 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGCATGCCGACCGCTCGG 238212 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||| ||| |||||| | | ||||||||||||||||||||| |||||||||| Sbjct 238213 GGGTCATGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTGACCAGACAAA 238272 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 238273 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATC 238318 >seq248 Length=537846 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||||||| |||||||||||||||||||||| ||||| Sbjct 666 CTAGTTAGCATGCCAGAGTCTCCTTCGTTATTGGAATTAACCAGACAAATCACTGCACCA 725 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| | ||||||||||||||||| |||||| |||||||||| |||||||||| Sbjct 726 ACTAAGAATGACCATGCACCACCACCCACAGAATCGAGAAAGAGCTCTCAATCTGTC 782 >seq606 Length=4286737 Score = 116 bits (128), Expect = 6e-24 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 2628385 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGGAA 2628444 Query 235 TCAAGAAAGAGC 246 || ||||||||| Sbjct 2628445 TCGAGAAAGAGC 2628456 >seq511 Length=34951 Score = 113 bits (124), Expect = 7e-23 Identities = 126/166 (76%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCGATGGGG--- 141 ||||| | |||| | |||||||||||||| | | ||| || | | | | | | Sbjct 34540 TGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCAGCCGCTCGGGGGTCGCGTAA 34481 Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| ||||||||||||||||| |||| |||||| ||||||| Sbjct 34480 CTAGTTAGCATGCCAGAGTCTTGTTCGTTATCGGAATTACCCAGGCAAATCGCTCCACC- 34422 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||| |||||||||||||| ||||| |||||||||| Sbjct 34421 ---AAGAACGGCCCTGCACCACCACCCACGGAATCGAGAAAGAGCT 34379 >seq498 Length=162558 Score = 100 bits (110), Expect = 5e-19 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||||| |||||||||||||||| |||||||||||||||| ||| || ||||||| Sbjct 113382 GTTATCATAATTAACCAGACAAATTGCTCCACCAACTAAGAATGGCTGTG---CACCACC 113326 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| |||||||||| |||||||||| Sbjct 113325 CAGGGAATCGAGAAAGAGCTCTCAATCTGTC 113295 >seq36 Length=4082582 Score = 100 bits (110), Expect = 5e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||||| Sbjct 3920333 AATCGCTCCACCAACTAAGAACGGCCATGCACCGCCACCCACGGAATCGAGAAAGAGCTC 3920392 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 3920393 TCAATCTGTC 3920402 >seq523 Length=1156184 Score = 93.3 bits (102), Expect = 7e-17 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||||||||||||||||| ||||||||||||||||||||| |||||||| || Sbjct 1461 GTTAGTGTAGCGCGCGTGCGGCCCCAGACATCTAAGGGCATCACAGACGTGTTATTG-CT 1403 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 ||| | || |||||| | |||| | || |||| ||||| Sbjct 1402 CAATC-TCAGATGGCTGAAGGCCACTTGTTCCTC-AAGAA 1365 >seq2750 Length=2008496 Score = 78.8 bits (86), Expect = 1e-12 Identities = 124/176 (70%), Gaps = 15/176 (9%) Strand=Plus/Plus Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGTCGATGGGG-- 141 |||||| | |||| | |||||||||||||| | | || | ||| | || | Sbjct 1667376 TGGCTGAATGCCATTTGTCCCTCTAAGAAGTTGGATGCTGACTGCTTAGGGGGTGTGTAA 1667435 Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| |||| | |||||||||||||||| |||| Sbjct 1667436 CTAGTTAGCATGCCAGTGTCTCGTTTGTTACTGTAATTAACCAGACAAATTGCTCC---- 1667491 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||| ||| | ||||||| |||| |||||| ||||||||| ||||| ||| Sbjct 1667492 ACTAGGAATG-------ACCACCAACCATGGAATCATGAAAGAGCTCTCAATGTGT 1667540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796558750374