Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq391 342 9e-92 seq2434 334 1e-89 seq709 329 6e-88 seq551 325 7e-87 seq2238 282 7e-74 seq2424 219 7e-55 seq447 214 3e-53 seq1613 136 7e-30 seq4149 104 4e-20 seq846 98.7 2e-18 seq240 86.0 1e-14 seq4849 75.2 2e-11 >seq391 Length=3439247 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 1548983 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1549042 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1549043 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1549102 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1549103 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1549162 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1549163 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1549222 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 1549223 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 1549276 >seq2434 Length=2693223 Score = 334 bits (370), Expect = 1e-89 Identities = 252/294 (86%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 368522 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 368463 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 368462 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 368403 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 368402 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 368343 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || Sbjct 368342 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAAC-TTTCTGACACCTCCTGCT 368284 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 368283 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 368230 >seq709 Length=813493 Score = 329 bits (364), Expect = 6e-88 Identities = 250/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 359441 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 359382 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| |||||||||||||||||||||||||||||||||||||| |||| | Sbjct 359381 ACGACGGTCTAACCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTG 359322 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359321 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 359262 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||||||||| |||||| || Sbjct 359261 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 359202 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 359201 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 359148 >seq551 Length=1648973 Score = 325 bits (360), Expect = 7e-87 Identities = 214/235 (91%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 869570 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 869629 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 869630 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 869689 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 869690 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 869749 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 869750 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 869804 >seq2238 Length=8442210 Score = 282 bits (312), Expect = 7e-74 Identities = 221/264 (84%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||| Sbjct 5971508 TCATCAGTAGGGTAAAGCTAACCTGTCTCATGACGGTCTAAGCCCCGCTCACATTCCCTA 5971567 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 5971568 TTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 5971627 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||||||| | |||||||||||||||| |||||| |||||||||| Sbjct 5971628 CATTGAAGGATCAAAAAGCAACATTGCTATGAACGCTTGGCCACCACAAACCAGTTATCC 5971687 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| | |||| || | ||| | | | ||||||| ||| Sbjct 5971688 CTGTGGTAACTTTTCTGACGCCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCACGAGG 5971747 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||| | | |||||||| Sbjct 5971748 CCTTGCTTTCACGATCTGTATTCA 5971771 >seq2424 Length=39377 Score = 219 bits (242), Expect = 7e-55 Identities = 170/201 (85%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || |||||||||||||| |||||||||||||| Sbjct 3737 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAGAACTAACCTGTCTC 3796 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||| ||| | Sbjct 3797 ATGATGGTCTAATCCCAGCTCATGTTCCCTATTAGTAGGTGAACAATCCAACACTTGGTG 3856 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||| | |||| |||||||||||||||||||||||| Sbjct 3857 AATTCTGCTTCACAATGATAGGAAGAACTGACAATGAAGGATCAAAAAGCAACGTCGCTG 3916 Query 180 TGAACGCTTGGCTGCCACAAG 200 ||||| |||| | |||||||| Sbjct 3917 TGAACACTTGACCGCCACAAG 3937 >seq447 Length=10427 Score = 214 bits (236), Expect = 3e-53 Identities = 170/203 (84%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || ||| |||||||||||||||||||| |||||||| | |||||||||| |||||| | Sbjct 5209 CAGCAGCAGGGTAAAACTAACCTGTCTGC-GACGGTCTGAGCCCAGCTCACCTTCCCTCT 5151 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| || |||||| ||||||||| || ||||||| | |||||||||||||||| Sbjct 5150 TAGCGGCTGAACAGCCCAACGCTTGGTGAGTTCTGCTGCACGGTGATAGGAAGAGCCGAG 5091 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||| | |||||| ||||||||||||||||||||| |||||||||||||| |||| Sbjct 5090 ATCGAAGGAGCCAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTCTCCC 5031 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 | || |||||| ||| |||||| Sbjct 5030 TCTGCTAACTTCACTGACACCTC 5008 >seq1613 Length=2699700 Score = 136 bits (150), Expect = 7e-30 Identities = 107/127 (84%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||| |||||||||||||| |||||| ||| | |||||||||||| |||| | ||||| Sbjct 260710 GGTGTAAACCCAGCTCACATTCCCTGCTAG-GAGTGAACAATCCAGTGCTTGGCAAATTC 260652 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||| || ||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 260651 TGCGTCACAATGATAGGAGGAGCCAGCATCGAAGGATCAAAAAGCAACGTCGCTATTAAC 260592 Query 185 GCTTGGC 191 |||||| Sbjct 260591 ACTTGGC 260585 >seq4149 Length=524069 Score = 104 bits (114), Expect = 4e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 503275 CATCAGTAGGGTAACACTAACCTGTCTCATGACGGTCTAATCCCAGCTCACATTCCCTAT 503334 Query 92 TAGTG 96 ||||| Sbjct 503335 TAGTG 503339 >seq846 Length=5956272 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT- 89 || |||| |||||||||||||||||||||| | ||||||| |||||||||| |||||| Sbjct 3468810 TCTTCAGCAGGGTAAAACTAACCTGTCTCACAATGGTCTAATCCCAGCTCACATTCCCTA 3468869 Query 90 ATTAGTGGGTGAACAATCCAACGCTT 115 | |||| |||||||| |||||| ||| Sbjct 3468870 ACTAGTAGGTGAACACTCCAACACTT 3468895 >seq240 Length=513616 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| || |||||| |||||| |||||||| | |||| || Sbjct 87043 TCATCAGTAGGGTAAAACTAACCCGTTTCATGATAGTCTAATCCCAGCTCCCATTCCTTA 86984 Query 91 TTAGTGGGTGAA 102 |||||| |||| Sbjct 86983 TTAGTGCATGAA 86972 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| || |||||| |||||| |||||||| | |||| || Sbjct 96154 TCATCAGTAGGGTAAAACTAACCCGTTTCATGATAGTCTAATCCCAGCTCCCATTCCTTA 96095 Query 91 TTAGTGGGTGAA 102 |||||| |||| Sbjct 96094 TTAGTGCATGAA 96083 >seq4849 Length=575021 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 ||||||||||||||| || |||||||| | |||||| |||||||||| |||||| |||| Sbjct 53479 TCAGTAGGGTAAAACCAATCTGTCTCACAATGGTCTAGACCCAGCTCATGTTCCCCATTA 53538 Query 94 G 94 | Sbjct 53539 G 53539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854132965824