Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2853 159 7e-37 seq523 132 9e-29 >seq2853 Length=1972243 Score = 159 bits (176), Expect = 7e-37 Identities = 194/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||| ||||||| Sbjct 238193 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAAGTCTGTG 238136 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||| |||||||||||| | || | || | | Sbjct 238135 ATGCCCTTAGATGTCCGGGGCCGCACGCACGCTACACTGACTGGCTCAGCTTGTGCGTAC 238076 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || || ||| ||||||| | | || | | ||||| ||||||| | | |||| Sbjct 238075 CCTCTGCTGGCAGGCATGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 238016 Query 251 CAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 || || || | || | |||||||||| || || ||| | | ||||| ||| | || || | Sbjct 238015 CATTTTTTCCCCTGTGAACGAGGAATTCCCAGCAAGTGTGGGTCATAAGCTCACGCTGCT 237956 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 237955 TAAGTCCCTGCCCTTTGTA 237937 >seq523 Length=1156184 Score = 132 bits (146), Expect = 9e-29 Identities = 158/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1397 AGATTGAG-CAATAACACGTCTGTGATGCCCTTAGATGTCTGGGGCCGCACGCGCGCTAC 1455 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| || | || | || | | ||| ||||| ||| |||||| | | || | Sbjct 1456 ACTAACTGGCTCAGCTTGTGCCTACCCTCCGCCGGCAGGCACGGGTAACCCATTGAACCC 1515 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||| ||||||| | ||||||||| || | | | || ||||||| ||||||||| Sbjct 1516 CATTTGTGATGGGGATCAGGGATTGCAATTGTTCCCCGTGAATGAGGAATTCCTAGTAAG 1575 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 || ||||| ||| | ||||||| |||||| Sbjct 1576 TGCAGGTCATAAGCGTTCATTGATTAAGTCCCT 1608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946903962112