Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2406 347 4e-93 seq10 188 2e-45 seq3603 147 7e-33 seq1605 129 2e-27 seq2434 96.9 1e-17 seq4275 87.8 6e-15 seq931 77.0 1e-11 >seq2406 Length=228393 Score = 347 bits (384), Expect = 4e-93 Identities = 221/240 (92%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 174944 CAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 174885 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 174884 TGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAG 174825 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 || || | || | ||||||||||||||||||||||||||||||||||||||||| Sbjct 174824 ATCCCGTCGGTGCCGGATGCCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 174765 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 174764 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATTACATCGCGTCAACA 174705 >seq10 Length=2612353 Score = 188 bits (208), Expect = 2e-45 Identities = 125/139 (90%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 ||||||| ||||| ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 285830 TCTACACATCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCT 285889 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||| ||| Sbjct 285890 TTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAATAGGTAG 285949 Query 368 GGACAGTGGGAATCTCGTT 386 |||||||||||||||| || Sbjct 285950 GGACAGTGGGAATCTCATT 285968 >seq3603 Length=2105695 Score = 147 bits (162), Expect = 7e-33 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 ||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1776306 TTTCACAGGGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCTCGCTGATTCTGCC 1776247 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT 374 |||||| |||||||||||| ||||| ||| |||||||| |||||||||| Sbjct 1776246 AAGCCCATTCCCTTGGCTGGGGTTTTGCTGGATAGTAGGTAGGGACAGT 1776198 >seq1605 Length=8694517 Score = 129 bits (142), Expect = 2e-27 Identities = 83/91 (91%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||| Sbjct 2376407 AGTCATAGTTACTCCCGCCATTTACCCGCGCGTCATTGAATTTCTTCACTGTGACATTCA 2376348 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||| ||||||||||||||| || ||||| Sbjct 2376347 GAGCACCGGGCAGAAATCACATCGCCTCAAC 2376317 >seq2434 Length=2693223 Score = 96.9 bits (106), Expect = 1e-17 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| || |||| |||| || |||| |||| | ||||||||| ||||||||| | Sbjct 368196 CTTCTCCTCCACGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACGCCTGCGTTACG 368137 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 || |||| ||| ||||||||| ||||||||||||||| | |||| |||||| | Sbjct 368136 CTTCGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC-----CCCGGAGC 368082 Query 127 GGCCCGCG 134 || |||| Sbjct 368081 GGGTCGCG 368074 >seq4275 Length=1264317 Score = 87.8 bits (96), Expect = 6e-15 Identities = 96/128 (75%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 136718 CTTCTGCTCCATGGGAGGTTTCCGTCCTCCCTGAGCTCACCTTAGGACACCTGCGTTACG 136777 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| || | ||||||| |||||| |||| | |||| |||||| | Sbjct 136778 CTTTGACAGGTGTACCCCGGCAGCCAACCTCCCCCCCTGCCGCTGTC-----CCCGGAGC 136832 Query 127 GGCCCGCG 134 || |||| Sbjct 136833 GGGTCGCG 136840 >seq931 Length=1224888 Score = 77.0 bits (84), Expect = 1e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 |||||||||||||||||| | ||| |||| ||| ||||||||| | ||||||||||||| Sbjct 73441 CTTAGGACACCTGCGTTACGCTTTGACAGGTGTACCGCCCCAGTCCAACTCCCCACCTGC 73500 Query 107 CAATGTC 113 | |||| Sbjct 73501 CGCTGTC 73507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634688934592