Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq248 352 9e-95 seq2418 215 2e-53 seq4813 118 3e-24 seq3612 118 3e-24 >seq248 Length=537846 Score = 352 bits (390), Expect = 9e-95 Identities = 395/518 (76%), Gaps = 20/518 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||||||||||| | || | |||||| |||||| ||||||| |||||||| Sbjct 1502 GTATTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTACTGTTATTTATCATCACTACC 1561 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | ||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1562 TCCCTGGGTCGGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1621 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||| |||||| |||||| ||||||| | |||||| | || ||||| Sbjct 1622 TTCTCAGGCTCCCTCTCTGGAATCAAACCCTGATTCCCCATCACCCGTGGTCACAATGGT 1681 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||| ||| ||||| | ||||| | Sbjct 1682 AGGCACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCACC 1741 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC--- 294 || |||||||| | | | ||||| || ||||||| | | | |||| Sbjct 1742 GTGGGGGCATGCGATCAGCTCAAGGTTATCTAGAGTCACCAAAGCTACTGGGCGGGCCCA 1801 Query 295 -GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTA 350 ||||| |||| ||| |||||| || | || || | ||| | | | |||| || Sbjct 1802 GGTTGG-TTTTGGTCTGATAAATGCATGTGTCCCCAGAGGCCGGCGCTCGTCGGCATATA 1860 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGT----AAGGTACTATCAAATAAACGAT 406 |||| |||||||||||||| |||||||| | ||| ||| | | |||| ||| || Sbjct 1861 TTAGTTCTAGAATTACCACAGTTATCCAAGGAGTGGGAGAGGAGCGACCAAAGGAACCAT 1920 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 || |||||||||||||| ||| ||||||||||||| || | || || ||| ||| Sbjct 1921 AATTGATTTAATGAGCCGTTCACAGTTTCACTGTA-CGA---CCCATGTGTACACACGCA 1976 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||| |||||||| |||||||||| Sbjct 1977 TGGCTTAAGCTTTGAGACGAGCATATG-CTACTGGCAG 2013 >seq2418 Length=2042648 Score = 215 bits (238), Expect = 2e-53 Identities = 159/184 (86%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || ||||||||||||||| | || |||||||| ||||||| ||||| | ||||||||| Sbjct 791700 GTGCTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 791641 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||| || Sbjct 791640 TCCCCAGGTCGGGAGTGGGTAATTTGAGTGCCTGCTGCCTTCCTTGGATGTGGTAGCTGT 791581 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||| ||||||||||| |||||| |||||| ||||||| | |||||| | |||||||| Sbjct 791580 TTCTCTGGCTCCCTCTCTGGAATCAAACCCTGATTCCCCATCACCCGTGGTCACCATGGT 791521 Query 180 AGGC 183 |||| Sbjct 791520 AGGC 791517 >seq4813 Length=8602192 Score = 118 bits (130), Expect = 3e-24 Identities = 117/152 (77%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||| ||| | | || |||| || ||||| | |||||||||||| Sbjct 4712352 CTCATTCCAATCACAGGCC-------AGTCCTGCATTGTTATTTTTCATCACTACCTCCC 4712300 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | ||| ||| |||||| | || | ||||||| ||||||||||||||||| | |||| Sbjct 4712299 CAGGTCAGGAGTGGGTATCTAGCACACCTGCTGTTTTCCTTGGATGTGGTAGTCATTTCC 4712240 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||||||| |||||| |||||| |||| Sbjct 4712239 CAGGCTCCCTCTCTGGAATCAAACCCTGATTC 4712208 >seq3612 Length=2172432 Score = 118 bits (130), Expect = 3e-24 Identities = 93/110 (85%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||| ||||||||||||||||||||||||| || | || Sbjct 576395 CAAAGGAACCATAACTGATTTCATGAGCCATTCGCAGTTTCACTGTACCACCTGTGTGTA 576454 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||| ||||||| | |||||||||||||||| |||||||||| Sbjct 576455 CTTACACATGCACGGCTTAAGCCTTGAGACAAGCATATG-CTACTGGCAG 576503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509927939584