Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2132 122 7e-23 seq1619 96.9 3e-15 seq535 93.3 3e-14 >seq2132 Length=409716 Score = 122 bits (134), Expect = 7e-23 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| ||| | ||||| || || ||||||||||||||||| ||||||||||| Sbjct 87097 CAGGAGGTGCAGGTGACCGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAAC 87156 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||||||||||||||| | || ||||| || ||||||| ||| Sbjct 87157 ATCCACTCGGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGA 87203 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || || || || ||||| | ||||||||| |||| | || || |||||||||||| Sbjct 86168 GACAACCCCCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCGCATGTAC 86227 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 86228 AAGAAGGCTGAGGCCTCCTTCTGGACGGCAGAGGAGGT 86265 >seq1619 Length=3721367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 |||||| ||||||||||| | | ||||| | |||||||| ||||| ||||| | Sbjct 1317523 CGTTTCAGCCAGGAGGTGCAGATCCCAGAGGCAAGATGTTTCTATGGCTTTCAGATCCTC 1317464 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||||| || ||||| ||||||||||| | ||||| || || |||||||| |||| Sbjct 1317463 ATGGAGAACGTGCACTCAGAGATGTACAGCCTGCTCATAGACACCTACATCAGAGAGC 1317406 >seq535 Length=245707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || ||||||||||| ||||||| || | |||| ||||||||| | Sbjct 91942 CATGAAGAGGTCTGGGATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCTTTGCTCCTCCTT 91883 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || ||| ||||||||||||||||| ||||| || ||||||| Sbjct 91882 CCCAGTG-TTCTTCTTCAGGTCAAGGAACTCAAAGATGTCCAAGTGCCAAGGCTCCAGGT 91824 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 91823 AGATGGCAAA 91814 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 ||||| ||||| |||||||||||||| |||||||| || || || || | |||||| Sbjct 96721 TCGTAGGGTCCCTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAGAGCTCCATAGTAAATG 96662 Query 65741 GTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATC 65800 ||||| || || | | || || | |||||| |||||| | || | | |||| Sbjct 96661 GTCTCAAAGATCTGCTGGTTGAGGAGCTGGGCCTCAGGGCTCTCAAAGGGGAACCTCATC 96602 Query 65801 AGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTG 65860 |||| || | || ||||| ||||| || || || |||||||| || || ||| ||| Sbjct 96601 AGGATGAAGGCATCTGCCAGGCCTTGCACGCCGATGCCGATGGGCCGGTGGCGCCGGTTG 96542 Query 65861 GAACGT 65866 || ||| Sbjct 96541 GAGCGT 96536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416563118560