Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq534 98.7 4e-15 >seq534 Length=137614 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| |||||||| ||||||||||||| ||| ||||| ||||||| Sbjct 76061 CTCCTTGAGGCGAGGCACCCCCAGGGTGACGTTCTTGGCCGAGACCCCGGCGTAGTGGAA 76002 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||| |||| ||| ||| ||||| || | | |||| |||| || || || Sbjct 76001 GGTGTTGAGAGTCATCTGGGTGGCAGGCTCCCCCAGGGACTGCGCCGCCAGCGCCCCGAC 75942 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 75941 CATCTCCCCGGG 75930 Score = 86.0 bits (94), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 351147 GGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACC 351206 |||||| || || |||| | | || || ||||| |||||||| |||| || ||| Sbjct 70107 GGTTGAGGCGGAAGGTGGACCAGGGCAGGATGCGC---ACGCGGTGTCCCATCATCGACA 70051 Query 351207 CGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCT 351266 ||||| || |||||||| || ||| ||||| |||||| ||||| | || |||||||| Sbjct 70050 TCTTGTGCAGGGTGGGCTGCCGGTTGAAGATGACGATGTCCCCATCACACATGTGCCTCT 69991 Query 351267 CCACCT 351272 |||||| Sbjct 69990 CCACCT 69985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083884021738692