Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq56606 461 2e-127 seq65150 143 7e-32 >seq56606 Length=2185 Score = 461 bits (510), Expect = 2e-127 Identities = 340/395 (86%), Gaps = 1/395 (0%) Strand=Plus/Minus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| |||||| || ||||||| | | ||||| |||||| || || ||| Sbjct 1339 ATTTCACCGAGTCTACAGTCGAGACAGTCAAGAGCTGGTTACACCATTCAAGCGGGACGG 1280 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1279 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 1220 Query 153 CGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGG 212 ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 1219 TGGGGCTTCGATCAAGAGCTTCGCTTACGCTAACCCCATCAATTAACCTTCCAGCACCGG 1160 Query 213 GCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAA 272 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1159 GCAGGCATCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTATGTTTTTAATAAA 1100 Query 273 CAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAG-TCCTTCACCC 331 |||| ||||||||||| | ||| || | | | | |||| | | |||||| ||| ||||| Sbjct 1099 CAGTTGCAGCGGCCTGTTTTCTGCGGCTGTCGTCAGCTCAGGAAGCAAGTTCCATCACCA 1040 Query 332 TCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGT 391 || | ||| ||||||||||||||||||||| || ||||||||||||||||| | |||| Sbjct 1039 ACAACAGCGTACCTTCTCCCGAAGTTACGGTACCCTTTTGCCTAGTTCCTTCAGCAGAGT 980 Query 392 TCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||||||||||||| | ||| ||| ||||| Sbjct 979 TCTCTCAAGCGCCTTGGTCTACTCGACCTGACCAC 945 >seq65150 Length=182698 Score = 143 bits (158), Expect = 7e-32 Identities = 183/253 (72%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| |||||| || ||||||| | | ||||| |||||| || || | | Sbjct 128469 ATTTCACCGAGTCTACAGTCGAGACAGTCAAGAGCTGGTTACACCATTCAAGCGGGACAG 128410 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 128409 AATTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 128350 Query 153 CGGGGCTTCGATCAAGAGCTTC--------GCGTTAGCTAACCCCATCAATTAACCTTCC 204 | |||||| || || |||||| | | | || | || |||||| Sbjct 128349 CAGGGCTTAAATTAAAAGCTTCCACTAATAAATTAATTTGACTTTCTTTTTTGACCTTCT 128290 Query 205 GGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTT 264 ||||||||||||| ||| | | ||||| || ||| |||||| | ||||||||| Sbjct 128289 GGCACCGGGCAGGTGTCGCCACATATACTTCATATTTACATTTTGCATATAGCTGTGTTT 128230 Query 265 TTAATAAACAGTC 277 || ||||||||| Sbjct 128229 TTGTTAAACAGTC 128217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259754506816