Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq63433 174 3e-41 seq12459 161 2e-37 >seq63433 Length=7969 Score = 174 bits (192), Expect = 3e-41 Identities = 191/248 (77%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||| || | ||| ||||| ||| |||||||||||||||||||||| |||| | Sbjct 1856 GTCAGTGCAGTGTATGTGTGGCCCCAGACACCTAAGGGCATCACAGACCTGTT-TTGC-T 1799 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | |||||| | ||| | |||||||||||||| | ||| |||| | | Sbjct 1798 CAATCT-CAGGTGGCTGAATGCCGCTTGTCCCTCTAAGAAGTTGGACACTGACCACTCGG 1740 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | ||||| || ||| || ||||||||||||||| Sbjct 1739 GGGTCGTGTAACTACTTAGCATGCAAGAGTCTCATTTGTTGTCAGAATTAACCAGACAAG 1680 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||| |||||||| ||||||||| ||||| ||||||| || || Sbjct 1679 TCACTCCACCAACTAAGAATGGCCATGCGTCACCACCCACGGAATCGAGAAAGAACTCTC 1620 Query 251 AATCTGTC 258 |||||||| Sbjct 1619 AATCTGTC 1612 >seq12459 Length=31230 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 24318 CTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCAGACAAATCACTCCACCA 24377 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||||||||||||||||| ||||| |||||||||| |||||||||| Sbjct 24378 ACTAAGAATGGCCATGCACCACCACCCATGGAATCGAGAAAGAGCTCTCAATCTGTC 24434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796159917363