Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq48404 322 8e-86 seq35582 289 5e-76 seq60551 248 1e-63 seq69996 246 5e-63 seq3571 185 1e-44 seq6451 178 2e-42 seq33250 143 5e-32 seq26114 109 9e-22 seq14986 109 9e-22 seq17363 107 3e-21 seq44487 93.3 7e-17 seq56606 73.4 7e-11 >seq48404 Length=41714 Score = 322 bits (356), Expect = 8e-86 Identities = 228/261 (87%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 25888 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTATT 25947 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 25948 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 26007 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 26008 TCAAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 26067 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 26068 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGGCC 26127 Query 273 ACACTTTCATGGTTTGTATTC 293 |||||| || ||||||| Sbjct 26128 CTGCTTTCACAGTCTGTATTC 26148 >seq35582 Length=9988 Score = 289 bits (320), Expect = 5e-76 Identities = 217/255 (85%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 2285 AGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGG 2344 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||| Sbjct 2345 TGAACAATCCAACGCTTGGTGAATTCTGCTTTGCAATGACAGGAAGAGCCGACATCGAAG 2404 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||| || ||||||||||| || |||||| |||||| ||||||| ||||||||||| Sbjct 2405 GATCAAAACGCGACGTCGCTATGCACACTTGGCCGCCACACGCCAGTTCTCCCTGTGGTA 2464 Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTT 278 ||||||||| || ||| || | ||| | | | |||||||| ||||| ||||| Sbjct 2465 ACTTTTCTGACAGCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCACTT 2524 Query 279 TCATGGTTTGTATTC 293 || ||| ||||||| Sbjct 2525 TCGCGGTCTGTATTC 2539 >seq60551 Length=38809 Score = 248 bits (274), Expect = 1e-63 Identities = 166/185 (90%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||||||||||||| |||||||||| || ||||| | ||||||||||||||||| Sbjct 22201 TCTTCAGTAGGGTAAAACTGACCTGTCTCACGATGGTCTGATCCCAGCTCACGTTCCCTG 22260 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| Sbjct 22261 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGAAAGAGCCGA 22320 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||| Sbjct 22321 CATCGAAGGATCAAAAAGCGATGTCGCTATGAACGCTTGGCCGCCACAAGCCGGTTATCC 22380 Query 211 CTGTG 215 |||| Sbjct 22381 TTGTG 22385 >seq69996 Length=29978 Score = 246 bits (272), Expect = 5e-63 Identities = 177/203 (87%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||| ||| | ||||||| |||||||||| |||||||| Sbjct 17209 CATCAGTAGGGTAAAACTAACCTGTTTCACAATGGTCTAA-CCCAGCTCACCTTCCCTAT 17151 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| |||||||||||||||||||| |||||||||||| ||| ||||||||| || Sbjct 17150 TAGCGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCATGATGGTAGGAAGAGATGAT 17091 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | | |||||||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct 17090 GTTGGTGGATCAAAGTGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 17031 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| |||||| Sbjct 17030 TGTGGTAACTTTTCTGACACCTC 17008 >seq3571 Length=3503 Score = 185 bits (204), Expect = 1e-44 Identities = 123/137 (90%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 631 ATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAAACCCAGCTGACGTTCCCTATT 690 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||| Sbjct 691 AGTAGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGACA 750 Query 153 TCGAAGGATCAAAAAGC 169 | |||||||| || ||| Sbjct 751 TTGAAGGATCGAAGAGC 767 >seq6451 Length=37838 Score = 178 bits (196), Expect = 2e-42 Identities = 193/263 (73%), Gaps = 35/263 (13%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 2227 TCATCAGTAAGGTAAAACTACCCTGTCTCACAACGGTCTAAACCCAGCTCACGTTCCCTA 2286 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| Sbjct 2287 ------------CAATCCACA----------------------ATGATAGGAAGAGCCGA 2312 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||||||| | ||||||||||| | | |||||||||||||||||||||||| Sbjct 2313 CATCAAAGGATCAAAAGGTGACGTCGCTATGGATGGTTGGCTGCCACAAGCCAGTTATCC 2372 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| | || ||| | | | |||||| | | | Sbjct 2373 CTGTGGTAACTTTTCTGACACCTCCTG-CTTAAAACCCAAAAAGCAGAAGGATAGTGAAG 2431 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 2432 CCCCGCTTTCACGGTCTGTATTC 2454 >seq33250 Length=105029 Score = 143 bits (158), Expect = 5e-32 Identities = 90/96 (94%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 45810 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAA-CCCAGCTCACGTTCCCTA 45752 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||||||||||||||||||| ||| |||||||| Sbjct 45751 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTG 45716 >seq26114 Length=48557 Score = 109 bits (120), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||| |||||||||||||| ||||||||| ||||||||||||||||||||| | Sbjct 46254 TCTTCAGGAGGGTAAAACTAACTTGTCTCATGGGAGTCTAAACCCAGCTCACGTTCATTG 46195 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||| ||||| | | ||| ||| |||||||| || | ||| ||||| | ||| Sbjct 46194 TTAATGGATGAACCAACTAACACTTGGTGAATTCTGTTTTGTGGTGACAGGAATGGTCGA 46135 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| | || | |||| ||| ||| || | || |||| || | | | | Sbjct 46134 CATC-AGGGCT---AAAGTAAC--TGCT---AATACCTGACTGCTGCAGGGTGGGTTGCT 46084 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||| || |||| || Sbjct 46083 CTGTGGTAACTTTTCTGACATCTCTTGC 46056 >seq14986 Length=11448 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 9336 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAATCCCAGCTCACGTTCCCTA 9277 Query 91 TTA 93 ||| Sbjct 9276 TTA 9274 >seq17363 Length=12502 Score = 107 bits (118), Expect = 3e-21 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||| ||||| || || |||||| ||||| ||||||| Sbjct 10740 TCATCAGTAGGGTAAAACTAACCTGTCCCATGATGGCCT-AACCCAACTCACATTCCCTA 10798 Query 91 TTAGTGGGTGAACAATCCA 109 |||| |||||||||||||| Sbjct 10799 TTAGGGGGTGAACAATCCA 10817 >seq44487 Length=27530 Score = 93.3 bits (102), Expect = 7e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| || Sbjct 20122 TCATCGGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACGTTCCGTA 20063 Query 91 TTAG 94 |||| Sbjct 20062 TTAG 20059 >seq56606 Length=2185 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 1927 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 1868 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| ||| || | | |||| || ||||||||||||| | |||| | | Sbjct 1867 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 1811 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| ||| ||||| Sbjct 1810 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853691505888