Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq56606 226 6e-57 seq65150 150 4e-34 >seq56606 Length=2185 Score = 226 bits (250), Expect = 6e-57 Identities = 249/321 (78%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 22 AGATGGATACGCCAGTATTCAA-GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGA 80 || |||| |||| ||| | ||| ||||||| ||| |||| |||| || | ||| Sbjct 1459 AGTTGGA-ACGCTAGT-TCCAATGGAGCCGTCCTTGAAATACCACCCTGGTAATGTTGAG 1516 Query 81 TTTCTAAC-CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACT 138 ||||||| | | | ||| || ||| |||| |||| ||||| | ||| ||||||||| Sbjct 1517 GTTCTAACTCTGTCC-CGT-TATCCGG-GACGAGGACCGTGTCTGGTGGGTAGTTTGACT 1573 Query 139 GGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGA 198 ||||||||| ||||| ||||||||||||||| | | ||| | | |||||| ||| ||| Sbjct 1574 GGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGA 1633 Query 199 AACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCA 258 || || ||| | ||| ||||||||||| | | || ||||||| |||| |||||| |||| Sbjct 1634 AATCACGCGTAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCA 1693 Query 259 GGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 || |||||||| || |||| |||||||| ||| ||| |||||| |||| |||||| |||| Sbjct 1694 GGTACGAAAGTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGG 1753 Query 319 ATAAAAGCTACCCTGGGGATA 339 ||||||| ||| ||||||||| Sbjct 1754 ATAAAAGGTACTCTGGGGATA 1774 >seq65150 Length=182698 Score = 150 bits (166), Expect = 4e-34 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 114 ACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCC 173 ||||||| || ||||||||||||||||||||| |||||| ||| |||||||||||||| Sbjct 128681 ACAGTGTTAGGTGGGCAGTTTGACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGCGCG 128740 Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTT 233 ||| | ||| || | | ||||||| | | || | || | ||| ||| || Sbjct 128741 CAATGGTACACTTGACGCGAATGGAAATCGCGTTATAAGGGTAATACTATAAGTGTGCTT 128800 Query 234 GACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCT 293 ||||| || || |||||| | |||| | |||| | || || |||||||| ||| | Sbjct 128801 GACTGTGAGACAAACAAGTCGAACAGGTAAGAAATTAGGCTATAGTGATCCGGTGGTTCC 128860 Query 294 GAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| |||| |||||| ||||||||||||||| || |||||| Sbjct 128861 GGATGGAAGGGCCATCGCTCAACGGATAAAAGCTACTCTAGGGATA 128906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981585364448