Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq65150 235 2e-59 seq56606 152 2e-34 >seq65150 Length=182698 Score = 235 bits (260), Expect = 2e-59 Identities = 353/495 (71%), Gaps = 25/495 (5%) Strand=Plus/Minus Query 102 ATCCAGTGCTCTACCTCCGGGAAGAAAC--ACGCGACGCTGCACCTAAATGCATTTCGGG 159 || ||||||| |||||||| | ||| | |||||| |||||| || ||| Sbjct 127329 ATTCAGTGCTTTACCTCCGTACATAAATTTATTTGACGCTAGTCCTAAAACTATATCGAC 127270 Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 | |||||||||||| | | || |||||| ||||||| ||| ||||||||||||| || Sbjct 127269 AAAAACCAGCTATCAGGGAATTCGATTGGAATTTCACCTCTAACCACAGGTCATCCGCTA 127210 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279 ||||||| ||| ||||| ||||| || |||||||| ||||||||||||| Sbjct 127209 TCATTTCAACGACAGTCGGTTCAGTCCTTCATTTAGTCTTACCTAAACTTCAACCTGCCC 127150 Query 280 ATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC--ACTCATACGCCCTATTCGGAC 337 |||| ||| ||| | ||||||||| || || | ||| | |||||||||| ||| Sbjct 127149 ATGGTTAGCTCATCCCCTTTCGGGTCT--ATTGTAACTTACTTA-ACGCCCTATTAAGAC 127093 Query 338 TCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGAC--ACAACGCAAACTCGCA 395 ||||||||||||| ||| || | | | ||||| |||| || |||| ||||| | Sbjct 127092 TCGCTTTCGCTACAGCT-CCACTTTCAGTTTAACTTCGCAACTTACAA---TAACTCTCC 127037 Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 ||||||| |||||||| ||||||| | || || | || | ||| ||| Sbjct 127036 GGCTCATACTTCAAAACGCACGCCATTAC-----ACATTAA-------TGTGCTTTGACA 126989 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515 |||||||| || ||||| | ||||||||||||| | |||| ||||||| ||| Sbjct 126988 CTTTGTAGGCTAATAATTTCATGATCTATTTCACTCCCATACCTGGGTTCTTTTCATCTT 126929 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 ||| |||| |||||||| | |||||||| | | |||||||||||||| | | ||||| Sbjct 126928 TCCTTCACAGTACTTGTTCACTATCGGTAAATGATTAGTATTTAGGCTTACCCGATGGTC 126869 Query 576 CCGCCAGATTCACAC 590 | | || ||||| || Sbjct 126868 CGGGCAAATTCAGAC 126854 >seq56606 Length=2185 Score = 152 bits (168), Expect = 2e-34 Identities = 212/291 (73%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||||||||| ||| | |||||||||| | ||| | | ||| || ||||||| Sbjct 296 GACTACGGACGTTAG-CACCCGCAGTCTGTCTCCCG-GATAGTACTCATAGGTATTCGGA 239 Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| | || |||||| | | | |||||||| | | |||||||||||| || Sbjct 238 GTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCT- 180 Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | | || ||| || |||||||| ||||||||||||||||||||||| | | Sbjct 179 -ATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCAGG 121 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||| |||||||| ||||||| || | |||||| |||||||| ||||||| Sbjct 120 CTTGATTAGCCTTTCATCCCTATCGTCATCCCCTCCCCTGGCTTTTCAACGACAGTGGGT 61 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 ||||||||||| || |||||| ||||||||||| |||||||||||| Sbjct 60 TCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCTCATGGATAGATC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816092791552