Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq65150 226 7e-57 seq56606 95.1 3e-17 >seq65150 Length=182698 Score = 226 bits (250), Expect = 7e-57 Identities = 306/411 (74%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| |||||| | ||| ||||| ||||||||| ||||| || ||||| || Sbjct 127226 CCACAGGTCAT-CCGCTATCATTT-CAACGACAGTCGGTTCAGTCCTTCATTTAGTC-TT 127170 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| |||||||||||| || ||| || || ||| |||||||||| | Sbjct 127169 ACCTAAACTT-CAACCTGCCCAT-GGTTAGCTCATCCCCTTT-CGGGTCTATTGTA-ACT 127114 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||||| ||||||||||||| |||||| |||| || ||| ||| | ||| | Sbjct 127113 TACTTAACGCCCTATTAAGACTCGCTTT-CGCTACAGCTCCACT-TTCAGTTTAACTTCG 127056 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | ||| | ||||| || | | | ||| | ||||| | |||| | || || || ||| Sbjct 127055 CAACTTACAATAACTCTCCGGCTCATACTTCAAAACGCACGCCATTACACATTAATGTGC 126996 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 | |||| ||||| || | ||||| |||||||||||||||| | || |||||| Sbjct 126995 TTTGACACT--TTGTAGGCTAATAATTTCATGATCTATTTCACTCCCATA-CCTGGGTTC 126939 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| |||||| |||| ||||| ||||||||||||| | | | |||||||||| ||| Sbjct 126938 TTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTAAATGATTAGTATTTAGGCTTA 126879 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| || |||||||| | | ||| | || ||| ||||||| Sbjct 126878 CCCGATGGTCCGGGCAAATTCAGAC-AGGATTCACATGTCCCGCCCTACTC 126829 >seq56606 Length=2185 Score = 95.1 bits (104), Expect = 3e-17 Identities = 72/81 (89%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||| | Sbjct 78 TTTTCAACGACAGTGGGTTCGGTCCTCCAGTTAGT-GTTACCCAACC-TTCAACCTGCTC 21 Query 90 ATAGGATAGATCGCCCGGTTT 110 || |||||||||||| || || Sbjct 20 AT-GGATAGATCGCCTGGGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240570428032