Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq56606 214 4e-53 seq65150 123 6e-26 >seq56606 Length=2185 Score = 214 bits (236), Expect = 4e-53 Identities = 294/404 (73%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 699 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 640 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||||| |||||| ||||| || ||||||| || |||||| | | Sbjct 639 CTGGAACCCTTGGTCTTTCGGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 580 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || || || | || ||||| | || ||| Sbjct 579 GCATTCGCACTTCTGAT-ACCTCCAGCATACT-TCTCAATACACCTTCATCGGCTTACAG 522 Query 178 GACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| || | || || |||||||||| ||| || ||||| Sbjct 521 AACGCTCCCCTACCACTTGACTAATGTCAAATCCGCAGCTTCGGCACATAGTTTTAGCCC 462 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| | Sbjct 461 CGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGT 402 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | Sbjct 401 GGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTCCCACTTAAC 342 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||||||||||||| | ||||| ||||| ||||| Sbjct 341 TATGATTTTGGGGCCTTAGCTGGCGGTCTGGATTGTTTTCCTCT 298 >seq65150 Length=182698 Score = 123 bits (136), Expect = 6e-26 Identities = 135/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 224 AACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACT 283 |||||| |||||| || | | |||||| || ||| ||| |||||||||||||||||| Sbjct 127600 AACTTA-GCCCCGTTATACTTGCGGCGCCAAAAAACTAGACTAGTGAGCTATTACGCACT 127542 Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT 343 | || | |||||||||||| |||||||| |||| ||||| || | | | || ||||| Sbjct 127541 CATTATATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTTTATGAATTTTGACCTCCTT 127482 Query 344 TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | ||||| ||| | |||||| ||||| || || |||||||| | |||||| || Sbjct 127481 TTCCACTTAGT-TTAATTTAGGGACCTTATTTGTTGGTCTGGGCTCTCTCCCTCACG 127426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176623498752