Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq17879 145 2e-32 >seq17879 Length=41821 Score = 145 bits (160), Expect = 2e-32 Identities = 239/347 (69%), Gaps = 26/347 (7%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||| ||||| || |||||| | | ||| ||||| | |||||||| Sbjct 18604 ATTAGTTAGTTGGCGGGGTAAATGCCCACCAAGACAATGATGGGTAGCTGGGCTGAGAGG 18545 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| | ||| || ||| | ||||| | || || | |||||||||| |||||||||||| Sbjct 18544 CTGAACAGCCGCAATGGGATTGAGATATGGCTCATATTCCTACGGGAAGCAGCAGTGGGG 18485 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || ||||||| | |||| ||||| ||||| |||||||| |||||||| || Sbjct 18484 AATTTTTCACAATGAACGAAAGTTTGATGAAGCAATACCGCGTGAATGATGAAGGTCTAT 18425 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAA---------GATA---------------ATGAC 383 | | |||||| ||| | | ||||| |||| ||| Sbjct 18424 TGATTGTAAAGTTCTTTTATTTAGGAAAAAAAGCATGATAGGAAATGATTATGCCCTGAT 18365 Query 384 GGTACT-TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442 ||||| || ||| | |||||||| ||||||||||| ||||||| || |||| Sbjct 18364 TGTACTAATTTGAATAAGTGACAGCTAACTATGTGCCAGCAGCTGCGGTAAAACATAGGT 18305 Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | ||| ||||||||| ||| | ||||||||||| | ||||| || Sbjct 18304 CACGAGCATTATCCGGATTTA-TTGGGCGTAAAGGAAGAGTAGGCGG 18259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496358145152