Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq17879 176 1e-41 >seq17879 Length=41821 Score = 176 bits (194), Expect = 1e-41 Identities = 231/320 (72%), Gaps = 9/320 (3%) Strand=Plus/Minus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 |||||||| ||||||||||| ||||||| || |||| | ||| ||||||||| ||| | Sbjct 18341 GCTAACTATGTGCCAGCAGCTGCGGTAAAACATAGGTCACGAGCATTATCCGGATTTATT 18282 Query 81 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCC 140 ||||||||||| | ||||| || || | |||||| || | ||||||| Sbjct 18281 GGGCGTAAAGGAAGAGTAGGCGGAGGAATAGATTTATTGTGAAATGCATTTGCTCAACA- 18223 Query 141 CGGGACTGCTTTTGAAACTGCAGGG----CTAGAGTGCAGGAGGGGCAAGTGGAATTCCT 196 | || || || | | ||||| | |||| | |||||||| Sbjct 18222 ----AATGTTTGCGATAAAGATCTTTCCTCTAGAATTAGTTTGGGGGTACTGGAATTCAA 18167 Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 ||||||||||| |||||||||| || |||||||||||| ||| |||||| | ||| Sbjct 18166 TGTGTAGCGGTGGAATGCGTAGAGATATTGAGGAACACCAGAGGCTAAGGCGAGTACCTG 18107 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | ||| |||| ||||| || |||||||||||||||||| ||||||||||||| || Sbjct 18106 GGACATAATTGACGCTGAGTCTTGAAAGCGTGGGGAGCAAATGGGATTAGATACCCCAGT 18047 Query 317 AGTCCACGCCGTAAACGATG 336 |||||||||||||||||||| Sbjct 18046 AGTCCACGCCGTAAACGATG 18027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202202270464