Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq38029 246 1e-62 seq48404 107 6e-21 >seq38029 Length=5259 Score = 246 bits (272), Expect = 1e-62 Identities = 174/199 (87%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||| ||||||||| ||||||||||||| ||| ||| | | | ||||||||||||||| Sbjct 855 CGGGTCCCACTTACTCTACACCTCTCATGTCTCTTCGTAGTGCCAGACTAGAGTCAAGCT 914 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||| || Sbjct 915 CAACAGGGTCTTCCTTCCCCGCTGATTCCACTAAGCCCATTCCCTTGGCTGTGGTTGAGC 974 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 975 TGGATAGAAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTACGTCACTAATTAG 1034 Query 414 ATGACGAGGCATTTGGCTA 432 |||||||| |||||| ||| Sbjct 1035 ATGACGAGACATTTGACTA 1053 >seq48404 Length=41714 Score = 107 bits (118), Expect = 6e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 26182 CTTCTGCTCTGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 26241 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 26242 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 26280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633844043104