Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq56606 289 1e-75 seq65150 190 7e-46 >seq56606 Length=2185 Score = 289 bits (320), Expect = 1e-75 Identities = 409/568 (72%), Gaps = 19/568 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| || Sbjct 1690 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 1631 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 1630 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 1572 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| ||| |||| | ||| ||| | ||| || |||||| || | Sbjct 1571 TCAAACTACCCACCAGACACGGTCCTCGTCCCGGATAACGGGACAGAGTTAGAA--CCTC 1514 Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | ||| |||||||||||| ||| ||||| |||||||| | | ||| | Sbjct 1513 AACATTACCAGGGTGGTATTTCAAGGACGGCTCCATTGGAACTAGCGTTCCAACTTCAAA 1454 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAAT-ACCAAGCTATAGTGAAG-G 296 | |||||||||||||||||||| | || || | | ||| || ||| ||| Sbjct 1453 GCCTCCCACCTATCCTACACAAGTAAGGTCAAAGTTCAGTGTCAAAGTTACAGTAAAGCT 1394 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 || |||||||| ||||| ||| || ||| |||| |||| || |||||| Sbjct 1393 TCATAGGGTCTTTCCGTCCCATAGCGGCAAGAGAGTGTCTTCACTCTCACCAGGATTTCA 1334 Query 357 CCGGGCCTGTGGTTGAGACAG-CAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| | || || ||||||| || | | | ||||| |||||| || || |||||||| Sbjct 1333 CCGAGTCTACAGTCGAGACAGTCAAGAG-CTGGTTACACCATTCAAGCGGGACGGAACTT 1275 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1274 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 1215 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | || || | || ||| || | ||||||||||||| Sbjct 1214 CTTCGATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGC 1165 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| ||| || ||||| || Sbjct 1164 ACCGGGCAGGCATCACACCCTATACGTC 1137 >seq65150 Length=182698 Score = 190 bits (210), Expect = 7e-46 Identities = 341/489 (70%), Gaps = 7/489 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| ||||||||| | ||| | |||| || | || |||| || Sbjct 128822 TCGACTTGTTTGTCTCACAGTCAAGCACACTTATAGTATTACCCTTATAACGCGATTTCC 128763 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | || | ||| ||| ||||||||||||| |||| ||||| |||||||||||| Sbjct 128762 ATTCGCGTCAAGTGTACCATTGCGCGCCTCCGTTACTTTTTAGGAGG-CAACCGCCCCAG 128704 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATC-ATGGGCCAAGGTTAGA-TATCC 178 | ||||| |||||| |||||| | | |||||| ||| | || | || || Sbjct 128703 TCAAACTGCCCACCTAACACTGTTCATATACCAGATATATGTGGTAATATGTGAGTAAAA 128644 Query 179 ACTACG-GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | || | | |||||||| || ||||||| | |||||||| | | || | Sbjct 128643 ATTAATTGAAATTGTGGTATTCCATTGTTGACTCCAACAACACTAGCGCATCATCTTCTT 128584 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 |||||||||| ||| || | |||| | | ||||| |||| || ||| ||| | Sbjct 128583 AGTCTCCCACATATGCTCTAAAAACAATTCATTTTTACAATATCAAGTTACAGTAAAGCT 128524 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| ||||| ||| || ||| |||| |||| || |||||| Sbjct 128523 TCATAGGGTCTTTCCGTCCCATAGCGGCAAGAGAGTGTCTTCACTCTCACCAGGATTTCA 128464 Query 357 CCGGGCCTGTGGTTGAGACAG-CAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| | || || ||||||| || | | | ||||| |||||| || || | ||| || Sbjct 128463 CCGAGTCTACAGTCGAGACAGTCAAGAGC-TGGTTACACCATTCAAGCGGGACAGAATTT 128405 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||| ||||||||||||||||||||||||| ||||||||||| |||||||| || ||| Sbjct 128404 ACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAGGG 128345 Query 476 CTTCAATTA 484 ||| ||||| Sbjct 128344 CTTAAATTA 128336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700988318848