Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq56282 134 1e-26 seq54308 98.7 8e-16 seq132 98.7 8e-16 >seq56282 Length=20701 Score = 134 bits (148), Expect = 1e-26 Identities = 129/162 (80%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 11906 GGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGTTG 11965 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| |||||||| | || ||||| | ||||||||| ||||| ||||| || Sbjct 11966 ATTGCTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCCTGTCTCTGTCTG 12025 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||||||||||||| || ||||| || | ||||||||| Sbjct 12026 AGACTCAATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 12065 Score = 102 bits (112), Expect = 6e-17 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| |||||||| | Sbjct 13308 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCCTCTTT 13367 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 13368 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 13426 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 13427 AGATGGCAAA--AGCCC 13441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | ||||||||| |||| |||||||| || | || | |||||||| Sbjct 9574 TCATACGGTCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAAAGCACCGTAATAAATG 9633 Query 65741 GTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| |||||| | | || ||| | | |||||| || || | || |||| || Sbjct 9634 GTCTCAAAAATGTGCTGGTTCAAGCGCTGG-GCCTCAGGACTTTCAAAGGGG-TACCGCA 9691 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 |||||| |||| || |||||||| || || ||||| || ||||||||||| ||| | Sbjct 9692 TCAGGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGCCTGT 9751 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 9752 TGGAGCGT 9759 >seq54308 Length=15023 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || ||||| | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 14317 CAGGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 14258 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 | || || || ||||||||| |||| || || || ||||| | ||| Sbjct 14257 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGA 14211 >seq132 Length=15727 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 8068 TGGCACGTTTTAGTCAGGAGGTGCAGATACCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 8009 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||||||||||||||| | ||||| || || ||||||| Sbjct 8008 TTCTCATTGAGAACGTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 7952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397166208212720