Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq35 268 3e-69 seq5 87.8 6e-15 >seq35 Length=7077570 Score = 268 bits (296), Expect = 3e-69 Identities = 177/196 (90%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||||||| |||||| ||| |||||| | | ||||||||||| ||||||| Sbjct 2782729 TCCCACTTATTCTACATCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAGGCTCAAC 2782788 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || || Sbjct 2782789 AGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTCACTGGA 2782848 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| ||||||||||||||||||| || |||||||||||| | ||||||||||||||| Sbjct 2782849 TAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCACATCACTAATTAGATGA 2782908 Query 418 CGAGGCATTTGGCTAC 433 ||| |||||||||||| Sbjct 2782909 CGACGCATTTGGCTAC 2782924 >seq5 Length=39211856 Score = 87.8 bits (96), Expect = 6e-15 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||| || | ||| || |||| |||||||||||||||||||||||||| |||| |||| Sbjct 22788252 TCCCACCATCTACT-GCACTTGATTGAATTTCTTCACTTTGACATTCAGGGCACCAGGCA 22788310 Query 514 GAAATCACATTGCGTCAACA 533 |||||||||||| |||||| Sbjct 22788311 GAAATCACATTGTATCAACA 22788330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635111601088