Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq32 116 3e-21 seq2 95.1 1e-14 seq12 91.5 1e-13 >seq32 Length=7345140 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 6868867 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 6868926 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| ||||| || Sbjct 6868927 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 6868986 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 6868987 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 6869026 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 6870100 CATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTTT 6870159 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| |||||||| ||||||| Sbjct 6870160 CCCAGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGCTCCAGGT 6870218 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 6870219 AGATGGCAAA--AGCCC 6870233 >seq2 Length=63311091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| || | Sbjct 19105670 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAAA 19105729 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||||||| Sbjct 19105730 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 19105786 >seq12 Length=17335395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | ||||| |||| |||||| Sbjct 8987946 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGATATCTGGCAGATGTAC 8987887 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 8987886 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 8987849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || |||||||| || |||||||||| Sbjct 8987148 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTTTATGGCTTCCAGA 8987089 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| | || || || || ||||| | || Sbjct 8987088 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTCCTTATTGACACCTACATTAAGG 8987029 Query 61376 A 61376 | Sbjct 8987028 A 8987028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541805983840