Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq37518 93.3 3e-14 seq13427 87.8 1e-12 seq26687 86.0 5e-12 seq40891 82.4 6e-11 >seq37518 Length=11320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| ||||| || | Sbjct 8269 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTAGCTCGCTGCTCTTCTTT 8210 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| || || ||||||||||| |||||| || ||||| | Sbjct 8209 CCCAGTG-TTCTTCTTCAAGTCAAGAAATTCAAAGATGTCCAAATGCCACGGCTCCAGAT 8151 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8150 AGATGGCAAA--AGCCC 8136 >seq13427 Length=23672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 7151 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 7210 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||| ||| Sbjct 7211 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACGTCA 7253 >seq26687 Length=16082 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| || | |||||||||||||| |||||||| || | || || |||||||| Sbjct 688 TCGTACGGCCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 629 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | |||||| ||| || | || |||| || Sbjct 628 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCAGGGCTTTC-AAAGGGGTACCGCA 571 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || |||||||| || || || || || ||||| ||||| ||| | Sbjct 570 TCAAGATGAAAGCATCTGCCAGACCCTGCACGCCGATGCCAATGGGCCGATGGCGCCTGT 511 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 510 TGGAGCGT 503 >seq40891 Length=31075 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 62 GACAACCCCCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 121 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 122 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 159 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| |||||||||||||||||||| || | || || || |||||| Sbjct 984 GAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACATTCAGAAATGTAC 1043 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 1044 AGTCTTCTTATTGACACCTACAT 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397284027986480