Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq18879 150 3e-34 seq18945 104 4e-20 seq17708 98.7 2e-18 >seq18879 Length=2618299 Score = 150 bits (166), Expect = 3e-34 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGC 128 ||| |||||||||| ||||||||||||||||||||||||| || | |||| ||| Sbjct 2301649 GACGTTTACTTTGAGAAAATTAGAGTGTTCAAAGCAGGCCGGCCGCCGGCATACTGCAGC 2301708 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||| ||||||||| | |||||||||| ||||||||| | | | || | ||| Sbjct 2301709 TAGGAATAATGGAATAGGAC-TCCGGTTCTATTCTGTTGGTTTTTGGAAACGGGGCCATG 2301767 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | ||||| | ||||| | |||||||||||||||||| Sbjct 2301768 ATTAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCG 2301827 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| |||||||| || ||||| |||||||||||||||| Sbjct 2301828 GCGCAAGACGGCCTAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 2301879 >seq18945 Length=2196376 Score = 104 bits (114), Expect = 4e-20 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||||||||| ||||||||||||| Sbjct 2099822 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCAAAGCGTTTACTTTGAGAAAATTAGAGTGT 2099881 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| ||| |||| ||| |||||||| ||||||||| | ||||| Sbjct 2099882 TCAAAGCAGGCCGACCGCTGCCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 2099940 Query 157 CTATTTTGTTGGT 169 ||||||||||||| Sbjct 2099941 CTATTTTGTTGGT 2099953 >seq17708 Length=865293 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | ||||||||||||||||||| | | || | |||||||| ||||| Sbjct 123789 GAATAGGAC-TCTGGTTCTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGA 123847 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | || || || |||||||||||||||||| ||||| Sbjct 123848 CGGCCGGGGGCATTTGTGTTGTGCTGCTAGAGGTGAAATTCTTGGACAGGCGCAAGACGG 123907 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| || ||||| || ||||| |||||||||||||||| |||||||||| Sbjct 123908 CCTAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 123959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915023686720