Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4902 324 2e-86 seq17929 114 2e-23 seq17841 100 5e-19 seq18436 87.8 3e-15 seq17680 80.6 5e-13 >seq4902 Length=228 Score = 324 bits (358), Expect = 2e-86 Identities = 194/204 (95%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 223 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 164 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 163 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 104 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 103 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 44 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 43 CTGTGGTAACTTTTCTGACACCTC 20 >seq17929 Length=959215 Score = 114 bits (126), Expect = 2e-23 Identities = 82/93 (88%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||| |||||| ||||| |||||| ||||| ||||||| Sbjct 720894 TCATCAGTAGGGTAAAACTAACCTGTGTCATGATGGTCT-AACCCAACTCACATTCCCTA 720836 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||| |||||||||||||| | ||| ||||| Sbjct 720835 TTAGCGGGTGAACAATCCAGCACTTGGTGAATT 720803 >seq17841 Length=3838712 Score = 100 bits (110), Expect = 5e-19 Identities = 188/275 (68%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| || |||| | |||||||| | ||| |||| | Sbjct 1579113 TCATCAGGAGGATAAAACTAACGTGACTCACAGCAGTCTAAACTCGGCTAGTGTTCATTG 1579054 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| ||| ||||| ||| | |||||| || | ||| ||||| || || Sbjct 1579053 TTAATGGGTAAACTGACCAACACTTGGTGCATTCTGTTTTGTGGTGACAGGAAAAGATGA 1578994 Query 151 CATCGAAGGAT------CAAA------AAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||| |||| | |||| ||| ||| | |||| | ||| ||| | || Sbjct 1578993 CATCAAAGGGTTGACGTCAAAGGGTTGAAGTAACTTTGCTAATAG---TTGACTGACTCA 1578937 Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 | ||| || ||||||||||||||||| ||||||| || | ||| | || | || Sbjct 1578936 GGGTGGTTTTCTCTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACCTAGA-ACATCAA 1578878 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| |||||||||| ||||| ||||||| Sbjct 1578877 AAGATCCTGAGGCCACACTAGCATGGCCTGTATTC 1578843 >seq18436 Length=7965200 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| |||| | |||||||||||||||| | |||||| Sbjct 4002377 TCATCAGTAGGGTAAAACTAACCTAACTCACAGCAGTCTAAACCCAGCTCATGGTCCCTA 4002436 Query 91 TTAGTGGG 98 |||||||| Sbjct 4002437 TTAGTGGG 4002444 >seq17680 Length=10563351 Score = 80.6 bits (88), Expect = 5e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||| | Sbjct 5167571 CATCAGTAAGGTAAAACTAACCTGTCTCACGACAGTCT-AACCCAGCTCATGTTCCCTCT 5167513 Query 92 T 92 | Sbjct 5167512 T 5167512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854235399840