Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq18945 156 1e-35 seq18239 156 1e-35 seq18241 145 2e-32 >seq18945 Length=2196376 Score = 156 bits (172), Expect = 1e-35 Identities = 117/136 (86%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||| ||||| | || | |||||| ||||||| ||||| | |||||||| || Sbjct 2099626 ACTCATTCCAGTTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACGTC 2099567 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2099566 CCCAGGTCGGGAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGATAGCCACTT 2099507 Query 122 CTCAGGCTCCCTCTCC 137 |||||||||||| ||| Sbjct 2099506 CTCAGGCTCCCTTTCC 2099491 >seq18239 Length=641369 Score = 156 bits (172), Expect = 1e-35 Identities = 140/174 (80%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTA 390 || || | ||||||||||||||||||||||||||| |||||||| | ||| ||| Sbjct 637841 GGCTTGTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGGAGTGGGAGAGGAG 637900 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 | | |||| ||| |||||| |||| |||| ||||| ||||||||||||| ||| Sbjct 637901 CGAACAAAGGAACCATAACTCATTTGTTGAGGCATTCACAGTTTCACTGTACCACCTGCA 637960 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct 637961 TGTACTTAGACATGCATGGCTTAAGCTTTGAGAGAAGCATATG-GTACTGGCAG 638013 >seq18241 Length=57870 Score = 145 bits (160), Expect = 2e-32 Identities = 134/167 (80%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAA 398 ||||||||||||||||||||||||||| ||||||| | || ||| | | |||| Sbjct 51635 AGCATGTATTAGCTCTAGAATTACCACAATTATCCAAGGAGCGGGAGAGGAGCGACCAAA 51694 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| | || ||||||||||||||||| |||||||||||||| | | | |||||| Sbjct 51695 GGAACCACAAGTGATTTAATGAGCCATTTGCAGTTTCACTGTACTGCCCACATGTACTTA 51754 Query 459 GACAT-GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| ||||||||||| |||||||| ||||||||| |||| ||||| Sbjct 51755 GACATGGCATGGCTTAAGCTTTGAGAGAAGCATATG-CTACAGGCAG 51800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510109021440