Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17757 129 5e-25 seq19211 87.8 1e-12 seq18321 82.4 6e-11 >seq17757 Length=370366 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 342049 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 342108 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 342109 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTG 342168 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| |||| || ||||| || | ||||||||| Sbjct 342169 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 342208 Score = 102 bits (112), Expect = 6e-17 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 343410 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 343469 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||||||||||| Sbjct 343470 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGTTCCAGGT 343528 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 343529 AGATGGCAAA--AGCCC 343543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 339379 TCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 339438 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | ||||| || || | || |||| || Sbjct 339439 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCCGGACTTTC-AAAGGGGTACCTCA 339496 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || ||||| || || || ||||| || |||||||||||||| | Sbjct 339497 TCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGACGTCTGT 339556 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 339557 TGGAGCGT 339564 >seq19211 Length=6011973 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| |||||||||||||||||||| ||| | || || || |||||| Sbjct 3088674 GAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 3088615 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 3088614 AGTCTTCTTATTGACACCTACAT 3088592 >seq18321 Length=7501628 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || |||||||| || ||||| ||||| ||| ||||| Sbjct 4162906 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTTTATGGCTTTCAGATCCTCATTGAGAAC 4162847 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 4162846 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 4162804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397474654139600