Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq2 96.9 3e-15 seq77 93.3 3e-14 >seq1 Length=88717973 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 70133731 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCCGAAGCTCGTTGTTTCTATGGCTTTCAGA 70133672 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| |||||||||||| | ||||| || || ||||||| Sbjct 70133671 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGTTTGCTCATAGACACCTACATCA 70133615 >seq2 Length=67421796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 53984328 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 53984387 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| ||||||| || || ||||| | || Sbjct 53984388 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACATTAAGG 53984447 Query 61376 A 61376 | Sbjct 53984448 A 53984448 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 53983495 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 53983554 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 53983555 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 53983592 >seq77 Length=1106213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 1099954 CATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTTT 1099895 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 1099894 ACCTGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 1099836 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 1099835 AGATGGCAAA--AGCCC 1099821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 65657 CTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG 65716 ||| |||| || || || | | ||||| |||| ||||||||| || | ||||||| Sbjct 1102962 CTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTTGGCCAGCTCACAGCTG 1102903 Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776 | ||| || || | | || ||||||||||| ||| | | || || | ||||| Sbjct 1102902 GCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCG 1102843 Query 65777 TCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATA 65836 |||||||| | || | | |||||||| || | ||| ||||| || || || || || Sbjct 1102842 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATG 1102783 Query 65837 CCGATGGGACGATGACGCAAATTGGAACGTCTCG 65870 || ||||| || || ||| ||||| || |||| Sbjct 1102782 CCAATGGGCCGGTGCCGCCGGTTGGAGCG-CTCG 1102750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396093072416000