Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201
6-09-27] 154,686 sequences; 1,171,929,618 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq800 172 1e-40
>seq800
Length=74403
Score = 172 bits (190), Expect = 1e-40
Identities = 207/276 (75%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | |||||||||| |||||||||||||
Sbjct 51148 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAGAAAATTAGAGTGT 51207
Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156
|||||||||||| || | |||| ||| |||||||| ||||||||| | |||||
Sbjct 51208 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 51266
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
||||||||||||||| | | || | |||||||| ||||| | |||||| | ||
Sbjct 51267 CTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 51326
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| | |||||||||||||||||| ||||| ||| |||||||| ||
Sbjct 51327 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCATT 51386
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||| |||||||||||||||| ||||||||||
Sbjct 51387 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 51421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913784313728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |