Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201
6-09-27] 154,686 sequences; 1,171,929,618 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq800 342 9e-92
seq29 113 8e-23
seq81696 95.1 2e-17
>seq800
Length=74403
Score = 342 bits (378), Expect = 9e-92
Identities = 253/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 43754 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 43695
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 43694 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 43635
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 43634 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 43575
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 43574 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 43515
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | |||||||| ||||| | |||||| ||| |||||||
Sbjct 43514 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 43461
>seq29
Length=9131718
Score = 113 bits (124), Expect = 8e-23
Identities = 119/154 (77%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| |||||| | ||||||| | | | |||| ||||||||| | |||||
Sbjct 8059730 TCATCAGTAGG-TAAAACCACCCTGTCTAACAAAGACCTAATTCCAGCTCACATCCCCTA 8059788
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| | | ||| |||||||| |||| |||||||||||| ||| ||||||||||| |
Sbjct 8059789 TCACAG--TGAGCAATCCAATGCTT---GAATTCTGCTTCCCAATGGTAGGAAGAGCCAA 8059843
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184
|| ||| ||||||||||| || |||||||||
Sbjct 8059844 GATGAAAGACTCAAAAAGCAATGTTGCTATGAAC 8059877
>seq81696
Length=252
Score = 95.1 bits (104), Expect = 2e-17
Identities = 97/125 (78%), Gaps = 5/125 (4%)
Strand=Plus/Minus
Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127
|||| |||||||||| | |||||| | | ||| |||||||| |||| |||||||||
Sbjct 242 CTAATCCCAGCTCACATCCCCTATCACAG--TGAGCAATCCAATGCTT---GAATTCTGC 188
Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187
||| ||| ||||||||||| | || ||| ||||||||||| || ||||||||| |
Sbjct 187 TTCCCAATGGTAGGAAGAGCCAAGATGAAAGACTCAAAAAGCAATGTTGCTATGAACACA 128
Query 188 TGGCT 192
| |||
Sbjct 127 TTGCT 123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853078362816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |