Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201 6-09-27] 154,686 sequences; 1,171,929,618 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq800 342 9e-92 seq29 113 8e-23 seq81696 95.1 2e-17 >seq800 Length=74403 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 43754 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 43695 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 43694 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 43635 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 43634 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 43575 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 43574 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 43515 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 43514 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 43461 >seq29 Length=9131718 Score = 113 bits (124), Expect = 8e-23 Identities = 119/154 (77%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| | ||||||| | | | |||| ||||||||| | ||||| Sbjct 8059730 TCATCAGTAGG-TAAAACCACCCTGTCTAACAAAGACCTAATTCCAGCTCACATCCCCTA 8059788 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | | | ||| |||||||| |||| |||||||||||| ||| ||||||||||| | Sbjct 8059789 TCACAG--TGAGCAATCCAATGCTT---GAATTCTGCTTCCCAATGGTAGGAAGAGCCAA 8059843 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 || ||| ||||||||||| || ||||||||| Sbjct 8059844 GATGAAAGACTCAAAAAGCAATGTTGCTATGAAC 8059877 >seq81696 Length=252 Score = 95.1 bits (104), Expect = 2e-17 Identities = 97/125 (78%), Gaps = 5/125 (4%) Strand=Plus/Minus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 |||| |||||||||| | |||||| | | ||| |||||||| |||| ||||||||| Sbjct 242 CTAATCCCAGCTCACATCCCCTATCACAG--TGAGCAATCCAATGCTT---GAATTCTGC 188 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 ||| ||| ||||||||||| | || ||| ||||||||||| || ||||||||| | Sbjct 187 TTCCCAATGGTAGGAAGAGCCAAGATGAAAGACTCAAAAAGCAATGTTGCTATGAACACA 128 Query 188 TGGCT 192 | ||| Sbjct 127 TTGCT 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853078362816