Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201
6-09-27] 154,686 sequences; 1,171,929,618 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq800 329 1e-87
seq1356 277 6e-72
seq525 217 5e-54
seq530 196 2e-47
seq2739 183 1e-43
seq1051 165 3e-38
seq494 159 1e-36
seq890 125 2e-26
seq93 89.7 2e-15
>seq800
Length=74403
Score = 329 bits (364), Expect = 1e-87
Identities = 357/483 (74%), Gaps = 58/483 (12%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| |
Sbjct 43427 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 43368
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| ||
Sbjct 43367 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 43308
Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171
| || |||| || | ||| |||||||| | |||| | ||
Sbjct 43307 GCGGCCGGCGCGCGCCGGCCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 43248
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222
|||| ||| | ||||| |||||||||| || |||||||||||||||
Sbjct 43247 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGACGGCCG 43189
Query 223 -----------------TTGCGCCGAAACGGC----------------TCCCACTTATTC 249
| || ||| | || | ||||||||||||
Sbjct 43188 GGACGCCGGCGGGCGGGTCGCCCCGCACCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 43129
Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309
||||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 43128 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 43069
Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 43068 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 43009
Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 43008 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 42949
Query 430 CTA 432
|||
Sbjct 42948 CTA 42946
Score = 309 bits (342), Expect = 1e-81
Identities = 186/196 (95%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 45632 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 45573
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 45572 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 45513
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 45512 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 45453
Query 417 ACGAGGCATTTGGCTA 432
||||||||||||||||
Sbjct 45452 ACGAGGCATTTGGCTA 45437
Score = 291 bits (322), Expect = 3e-76
Identities = 182/196 (93%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 65889 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 65830
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 65829 CAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 65770
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 65769 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCTTTCATGCACGTCACTAATTAGATG 65710
Query 417 ACGAGGCATTTGGCTA 432
||||||||||||||||
Sbjct 65709 ACGAGGCATTTGGCTA 65694
Score = 246 bits (272), Expect = 1e-62
Identities = 147/154 (95%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 69327 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCT 69268
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 69267 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCTTTCATG 69208
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
| ||||||||||||||||||||||||||||||||
Sbjct 69207 CACGTCACTAATTAGATGACGAGGCATTTGGCTA 69174
Score = 228 bits (252), Expect = 3e-57
Identities = 143/154 (93%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 58670 GACTCGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCTCGTTCCCT 58611
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 58610 CAGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCATTCATCCATTCATG 58551
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
| | |||||||||||||||| |||||||||||||
Sbjct 58550 CACATCACTAATTAGATGACAAGGCATTTGGCTA 58517
Score = 170 bits (188), Expect = 6e-40
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 38497 CTCCCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCA 38438
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 38437 CTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 38394
Score = 165 bits (182), Expect = 3e-38
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 33712 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 33653
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| |||||||||
Sbjct 33652 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 33614
Score = 156 bits (172), Expect = 1e-35
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 1768 TTAAGAGAGTCATAGTTACTCCCACCGTTTACCCGCACTTCATTGAATTTCTTCACTTTG 1709
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| |||||||||
Sbjct 1708 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1670
>seq1356
Length=25365
Score = 277 bits (306), Expect = 6e-72
Identities = 179/196 (91%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||| |||||||||||| |||| |||||| | ||||||||||||||||||
Sbjct 10207 CTCCCACTTACTCTACACCTCTCTAGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAA 10266
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 10267 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 10326
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||||||||||||||| ||||| || |||||||||||| ||| ||||||||||||
Sbjct 10327 ATAGTAGATAGGGACAGTGGAAATCTTGTCCATCCATTCATGCACGTAACTAATTAGATG 10386
Query 417 ACGAGGCATTTGGCTA 432
||||||||||| ||||
Sbjct 10387 ACGAGGCATTTAGCTA 10402
>seq525
Length=172883
Score = 217 bits (240), Expect = 5e-54
Identities = 147/164 (90%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328
|||| ||| || ||||||||||||||||||||| ||| |||||| |||||| ||||||
Sbjct 148687 CACATTGTCAGATTAGAGTCAAGCTCAACAGGGTTTTCCTTCCCC--TGATTCTGCCAAG 148744
Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388
|| ||||||||||||||| | | ||| |||||||| |||||||||||||||||||||| |
Sbjct 148745 CCTGTTCCCTTGGCTGTGTTGTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCA 148804
Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 148805 TCCATTCATGCGCATCACTAATTAGATGACGAGGCATTTGGCTA 148848
>seq530
Length=86132
Score = 196 bits (216), Expect = 2e-47
Identities = 136/154 (88%), Gaps = 3/154 (2%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 51191 GACTAGAGTCAAGCTCAACAAGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCT 51132
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||||||| || || ||| |||| ||||||||||||||||| ||||||| |||
Sbjct 51131 TGGCTGTGGTTTCACTGGA---TAGGTAGGAACAGTGGGAATCTCGTTCATCCATTTATG 51075
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||| ||||||||| || || |||||||||| ||
Sbjct 51074 CGCATCACTAATTCAATTACAAGGCATTTGGTTA 51041
Score = 114 bits (126), Expect = 4e-23
Identities = 85/98 (87%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495
||||||| |||||||| |||| ||||||| | | || |||||||||||||||||||
Sbjct 45137 TAAGAGACTCATAGTTGGTCCCAGCGTTTACTTGGG-TTCATTGAATTTCTTCACTTTGA 45079
Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||| || ||||||
Sbjct 45078 CATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 45041
>seq2739
Length=21153
Score = 183 bits (202), Expect = 1e-43
Identities = 165/206 (80%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||| |||||||||||||||||||| ||| ||||| | | || | || ||||||| |
Sbjct 6338 CTCTCACTTATTCTACACCTCTCATGTCTCCTCACAGTGCCACACCAAAGGCAAGCTCCA 6397
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| ||||||||||| ||||||||| ||||||| ||| |||| ||||| ||| |
Sbjct 6398 TAGGTTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTT-----GGCTATGGTTGGGCTGG 6452
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||| |||||||||||| ||| ||||||||| | ||||||||| | |||
Sbjct 6453 ATAGTAGGTAGGGGCAGTGGGAATCTTGTTCATCCATTCACACTTGTCACTAATCAAATG 6512
Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442
|||||||||||||||| ||||| ||
Sbjct 6513 ACGAGGCATTTGGCTA-TTTAAGGGA 6537
Score = 104 bits (114), Expect = 8e-20
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
|||| || |||||| |||||||| || | | |||| ||||| ||| |||||||||||||
Sbjct 5788 CTTAGGAAAGTCATTGTTACTCCTGCTGGTGACCCACGCTTCATTGTATTTCTTCACTTT 5847
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
| ||||||||||| |||||| |||| ||||| |||||||
Sbjct 5848 GGCATTCAGAGCATTGGGCACAAATTGCATTGTGTCAACA 5887
>seq1051
Length=53904
Score = 165 bits (182), Expect = 3e-38
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 8416 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTT 8357
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 8356 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 8316
Score = 158 bits (174), Expect = 4e-36
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 16043 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 15984
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529
||||||||||||||||||||||||||||| |||||
Sbjct 15983 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTC 15949
>seq494
Length=164187
Score = 159 bits (176), Expect = 1e-36
Identities = 125/149 (84%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||||||||||||| ||| |||||||| |||||| | |||||||||||||||
Sbjct 55322 CAGGCTCAACAGGGTCTTCTTCCCCTGCTGATTCTGCCAAGACTGTTCCCTTGGCTGTGT 55381
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403
|||| || |||||||| ||||||| ||||| |||| ||| || | |||||| | | |
Sbjct 55382 TTTCACTGGATAGTAGGTAGGGACTGTGGGCATCTTGTTCATTCATTTATTCATTCACAT 55441
Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432
|||| ||||||||| ||||||||||||||
Sbjct 55442 CACTGATTAGATGATGAGGCATTTGGCTA 55470
>seq890
Length=40389
Score = 125 bits (138), Expect = 2e-26
Identities = 90/104 (87%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|| ||||| ||||||||||||| |||| ||| || || || ||| |||||||||||||
Sbjct 6003 CTGCCTTAGGAGAGTCATAGTTGCTCCTGCCACTTGCCTGCACTTCATTGAATTTCTTCA 5944
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 5943 CTTTGACATTGAGAGTACTGGGCAGAAATCACATTGCATCAACA 5900
>seq93
Length=2596074
Score = 89.7 bits (98), Expect = 2e-15
Identities = 82/101 (81%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||| | || || || |||||| || | ||| || ||| ||||||||||||||||
Sbjct 664071 CTTAAGAAAATCCTAAGTCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 664013
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||| | |||||||| ||||||||||||| |||||
Sbjct 664012 TGACATTCTGGGCACTGGGATGAAATCACATTGCACCAACA 663972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1632670574528
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