Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201 6-09-27] 154,686 sequences; 1,171,929,618 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq800 329 1e-87 seq1356 277 6e-72 seq525 217 5e-54 seq530 196 2e-47 seq2739 183 1e-43 seq1051 165 3e-38 seq494 159 1e-36 seq890 125 2e-26 seq93 89.7 2e-15 >seq800 Length=74403 Score = 329 bits (364), Expect = 1e-87 Identities = 357/483 (74%), Gaps = 58/483 (12%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 43427 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 43368 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| || Sbjct 43367 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 43308 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 | || |||| || | ||| |||||||| | |||| | || Sbjct 43307 GCGGCCGGCGCGCGCCGGCCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 43248 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 |||| ||| | ||||| |||||||||| || ||||||||||||||| Sbjct 43247 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGACGGCCG 43189 Query 223 -----------------TTGCGCCGAAACGGC----------------TCCCACTTATTC 249 | || ||| | || | |||||||||||| Sbjct 43188 GGACGCCGGCGGGCGGGTCGCCCCGCACCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 43129 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| ||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 43128 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 43069 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 43068 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 43009 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 43008 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 42949 Query 430 CTA 432 ||| Sbjct 42948 CTA 42946 Score = 309 bits (342), Expect = 1e-81 Identities = 186/196 (95%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 45632 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 45573 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 45572 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 45513 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 45512 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 45453 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 45452 ACGAGGCATTTGGCTA 45437 Score = 291 bits (322), Expect = 3e-76 Identities = 182/196 (93%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 65889 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 65830 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct 65829 CAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 65770 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||| Sbjct 65769 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCTTTCATGCACGTCACTAATTAGATG 65710 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 65709 ACGAGGCATTTGGCTA 65694 Score = 246 bits (272), Expect = 1e-62 Identities = 147/154 (95%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 69327 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCT 69268 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||||| Sbjct 69267 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCTTTCATG 69208 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | |||||||||||||||||||||||||||||||| Sbjct 69207 CACGTCACTAATTAGATGACGAGGCATTTGGCTA 69174 Score = 228 bits (252), Expect = 3e-57 Identities = 143/154 (93%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 58670 GACTCGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCTCGTTCCCT 58611 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct 58610 CAGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCATTCATCCATTCATG 58551 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | | |||||||||||||||| ||||||||||||| Sbjct 58550 CACATCACTAATTAGATGACAAGGCATTTGGCTA 58517 Score = 170 bits (188), Expect = 6e-40 Identities = 100/104 (96%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 38497 CTCCCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCA 38438 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 38437 CTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 38394 Score = 165 bits (182), Expect = 3e-38 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 33712 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 33653 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||||| Sbjct 33652 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 33614 Score = 156 bits (172), Expect = 1e-35 Identities = 94/99 (95%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| Sbjct 1768 TTAAGAGAGTCATAGTTACTCCCACCGTTTACCCGCACTTCATTGAATTTCTTCACTTTG 1709 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||||| Sbjct 1708 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1670 >seq1356 Length=25365 Score = 277 bits (306), Expect = 6e-72 Identities = 179/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| |||||||||||| |||| |||||| | |||||||||||||||||| Sbjct 10207 CTCCCACTTACTCTACACCTCTCTAGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAA 10266 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 10267 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 10326 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct 10327 ATAGTAGATAGGGACAGTGGAAATCTTGTCCATCCATTCATGCACGTAACTAATTAGATG 10386 Query 417 ACGAGGCATTTGGCTA 432 ||||||||||| |||| Sbjct 10387 ACGAGGCATTTAGCTA 10402 >seq525 Length=172883 Score = 217 bits (240), Expect = 5e-54 Identities = 147/164 (90%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 |||| ||| || ||||||||||||||||||||| ||| |||||| |||||| |||||| Sbjct 148687 CACATTGTCAGATTAGAGTCAAGCTCAACAGGGTTTTCCTTCCCC--TGATTCTGCCAAG 148744 Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 || ||||||||||||||| | | ||| |||||||| |||||||||||||||||||||| | Sbjct 148745 CCTGTTCCCTTGGCTGTGTTGTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCA 148804 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 148805 TCCATTCATGCGCATCACTAATTAGATGACGAGGCATTTGGCTA 148848 >seq530 Length=86132 Score = 196 bits (216), Expect = 2e-47 Identities = 136/154 (88%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| Sbjct 51191 GACTAGAGTCAAGCTCAACAAGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCT 51132 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| || || ||| |||| ||||||||||||||||| ||||||| ||| Sbjct 51131 TGGCTGTGGTTTCACTGGA---TAGGTAGGAACAGTGGGAATCTCGTTCATCCATTTATG 51075 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| ||||||||| || || |||||||||| || Sbjct 51074 CGCATCACTAATTCAATTACAAGGCATTTGGTTA 51041 Score = 114 bits (126), Expect = 4e-23 Identities = 85/98 (87%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||| |||||||| |||| ||||||| | | || ||||||||||||||||||| Sbjct 45137 TAAGAGACTCATAGTTGGTCCCAGCGTTTACTTGGG-TTCATTGAATTTCTTCACTTTGA 45079 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| || |||||| Sbjct 45078 CATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 45041 >seq2739 Length=21153 Score = 183 bits (202), Expect = 1e-43 Identities = 165/206 (80%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||||||||||||||||| ||| ||||| | | || | || ||||||| | Sbjct 6338 CTCTCACTTATTCTACACCTCTCATGTCTCCTCACAGTGCCACACCAAAGGCAAGCTCCA 6397 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||||| ||||||||| ||||||| ||| |||| ||||| ||| | Sbjct 6398 TAGGTTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTT-----GGCTATGGTTGGGCTGG 6452 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||| |||||||||||| ||| ||||||||| | ||||||||| | ||| Sbjct 6453 ATAGTAGGTAGGGGCAGTGGGAATCTTGTTCATCCATTCACACTTGTCACTAATCAAATG 6512 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||| ||||| || Sbjct 6513 ACGAGGCATTTGGCTA-TTTAAGGGA 6537 Score = 104 bits (114), Expect = 8e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||| || |||||| |||||||| || | | |||| ||||| ||| ||||||||||||| Sbjct 5788 CTTAGGAAAGTCATTGTTACTCCTGCTGGTGACCCACGCTTCATTGTATTTCTTCACTTT 5847 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||| |||||| |||| ||||| ||||||| Sbjct 5848 GGCATTCAGAGCATTGGGCACAAATTGCATTGTGTCAACA 5887 >seq1051 Length=53904 Score = 165 bits (182), Expect = 3e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 8416 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTT 8357 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 8356 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 8316 Score = 158 bits (174), Expect = 4e-36 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 16043 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 15984 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||||||||||||||||||||||||||| ||||| Sbjct 15983 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTC 15949 >seq494 Length=164187 Score = 159 bits (176), Expect = 1e-36 Identities = 125/149 (84%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||||||||||||| ||| |||||||| |||||| | ||||||||||||||| Sbjct 55322 CAGGCTCAACAGGGTCTTCTTCCCCTGCTGATTCTGCCAAGACTGTTCCCTTGGCTGTGT 55381 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403 |||| || |||||||| ||||||| ||||| |||| ||| || | |||||| | | | Sbjct 55382 TTTCACTGGATAGTAGGTAGGGACTGTGGGCATCTTGTTCATTCATTTATTCATTCACAT 55441 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 |||| ||||||||| |||||||||||||| Sbjct 55442 CACTGATTAGATGATGAGGCATTTGGCTA 55470 >seq890 Length=40389 Score = 125 bits (138), Expect = 2e-26 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || ||||| ||||||||||||| |||| ||| || || || ||| ||||||||||||| Sbjct 6003 CTGCCTTAGGAGAGTCATAGTTGCTCCTGCCACTTGCCTGCACTTCATTGAATTTCTTCA 5944 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| |||| ||||||||||||||||||||| |||||| Sbjct 5943 CTTTGACATTGAGAGTACTGGGCAGAAATCACATTGCATCAACA 5900 >seq93 Length=2596074 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||| | || || || |||||| || | ||| || ||| |||||||||||||||| Sbjct 664071 CTTAAGAAAATCCTAAGTCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 664013 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||| | |||||||| ||||||||||||| ||||| Sbjct 664012 TGACATTCTGGGCACTGGGATGAAATCACATTGCACCAACA 663972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632670574528