Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201 6-09-27] 154,686 sequences; 1,171,929,618 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq800 457 3e-126 >seq800 Length=74403 Score = 457 bits (506), Expect = 3e-126 Identities = 415/515 (81%), Gaps = 16/515 (3%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||| Sbjct 50951 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 50892 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50891 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 50832 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||| Sbjct 50831 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGG 50772 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | | ||||||||||||||||||||||||| ||| ||||| | |||||| | | Sbjct 50771 CACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCGCCGCG 50712 Query 243 AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GT 296 || | |||||| | | | ||||| || ||||||| | || | |||| || Sbjct 50711 GGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCCGGGT 50652 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATTA 353 ||| |||| ||| |||||| ||| | | || || ||||| | | | |||||||||| Sbjct 50651 TGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTATTA 50593 Query 354 GCTCTAGAATTACCACGGTTATCCATGTA----GTAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||| |||||||| | | | ||| | | |||| ||| ||||| Sbjct 50592 GCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGAGGAGCGACCAAAGGAACCATAAC 50533 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||||||||||||||| | | | ||||||||||||||||| Sbjct 50532 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATGCATGG 50473 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||||||| |||||||||| Sbjct 50472 CTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 50439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508063622656