Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Setophaga_20coronata_20coronata_20[genbank_20GCA_5F001746935.1_20201
6-09-27] 154,686 sequences; 1,171,929,618 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq800 457 3e-126
>seq800
Length=74403
Score = 457 bits (506), Expect = 3e-126
Identities = 415/515 (81%), Gaps = 16/515 (3%)
Strand=Plus/Minus
Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||||
Sbjct 50951 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 50892
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50891 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 50832
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
|||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||
Sbjct 50831 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGG 50772
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242
| | ||||||||||||||||||||||||| ||| ||||| | |||||| | |
Sbjct 50771 CACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCGCCGCG 50712
Query 243 AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GT 296
|| | |||||| | | | ||||| || ||||||| | || | |||| ||
Sbjct 50711 GGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCCGGGT 50652
Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATTA 353
||| |||| ||| |||||| ||| | | || || ||||| | | | ||||||||||
Sbjct 50651 TGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTATTA 50593
Query 354 GCTCTAGAATTACCACGGTTATCCATGTA----GTAAGGTACTATCAAATAAACGATAAC 409
|||||||||||||||| |||||||| | | | ||| | | |||| ||| |||||
Sbjct 50592 GCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGAGGAGCGACCAAAGGAACCATAAC 50533
Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469
|||||||||||||||||||||||||||||||| | | | |||||||||||||||||
Sbjct 50532 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATGCATGG 50473
Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||| |||||||||||||||||| ||||||||||
Sbjct 50472 CTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 50439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1508063622656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |