Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 127 3e-27
>seq3858
Length=18945
Score = 127 bits (140), Expect = 3e-27
Identities = 200/268 (75%), Gaps = 20/268 (7%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGT-AGTCAA--CGCGAGCTTGATGACTCGCGCTTACTAGGAAT 57
||||||||||||||||| | | |||| ||||||||| ||||| ||| || ||| |||||
Sbjct 5903 GTACAAAGGGCAGGGACCTTAATCAATCCGCGAGCTT-ATGACCCGCACT-ACTGGGAAT 5846
Query 58 TTCCTCGTTGAAGACC-AACA-ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA 115
| ||||||| | | || | |||||||| | ||||||||||||| |||||
Sbjct 5845 T-CCTCGTTCACGGGGGAAGATATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAAC 5787
Query 116 GA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTC---GTTGAATACATCAGTGTAGCG 171
| ||||||| |||| |||| ||| ||| | | | ||| |||||||||||
Sbjct 5786 GGGTTACCCGCGCCTGCCGGCGGAGGG--TAGGCACCAAGCTGAGCCAGTCAGTGTAGCG 5729
Query 172 CGCGTGCGGCCCAGAACA-TCTAAGGGCATCACAGACCTG-TTATTGCCTCAAACTTCCG 229
|||||||||||| | ||| ||||||||||||||||||||| |||||| ||||| || |
Sbjct 5728 CGCGTGCGGCCCCGGACAATCTAAGGGCATCACAGACCTGTTTATTG-CTCAATCTCGGG 5670
Query 230 TGGCCTAAAAGGCCA--TCTCCCTCGAA 255
||| || || | ||| | |||||| ||
Sbjct 5669 TGG-CTGAACGCCCACTTGTCCCTCTAA 5643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751962882925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |