Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3858 127 3e-27 >seq3858 Length=18945 Score = 127 bits (140), Expect = 3e-27 Identities = 200/268 (75%), Gaps = 20/268 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGT-AGTCAA--CGCGAGCTTGATGACTCGCGCTTACTAGGAAT 57 ||||||||||||||||| | | |||| ||||||||| ||||| ||| || ||| ||||| Sbjct 5903 GTACAAAGGGCAGGGACCTTAATCAATCCGCGAGCTT-ATGACCCGCACT-ACTGGGAAT 5846 Query 58 TTCCTCGTTGAAGACC-AACA-ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA 115 | ||||||| | | || | |||||||| | ||||||||||||| ||||| Sbjct 5845 T-CCTCGTTCACGGGGGAAGATATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAAC 5787 Query 116 GA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTC---GTTGAATACATCAGTGTAGCG 171 | ||||||| |||| |||| ||| ||| | | | ||| ||||||||||| Sbjct 5786 GGGTTACCCGCGCCTGCCGGCGGAGGG--TAGGCACCAAGCTGAGCCAGTCAGTGTAGCG 5729 Query 172 CGCGTGCGGCCCAGAACA-TCTAAGGGCATCACAGACCTG-TTATTGCCTCAAACTTCCG 229 |||||||||||| | ||| ||||||||||||||||||||| |||||| ||||| || | Sbjct 5728 CGCGTGCGGCCCCGGACAATCTAAGGGCATCACAGACCTGTTTATTG-CTCAATCTCGGG 5670 Query 230 TGGCCTAAAAGGCCA--TCTCCCTCGAA 255 ||| || || | ||| | |||||| || Sbjct 5669 TGG-CTGAACGCCCACTTGTCCCTCTAA 5643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751962882925