Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq3858 73.4 2e-11 >seq3858 Length=18945 Score = 73.4 bits (80), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGT-GCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||| | |||| || || | ||| ||| |||| ||||| |||| Sbjct 5357 AACCCAAAGACTTGGGTTTCCCGGGAGCTTGCCCGGCGGGTCATGGGAATAACGCCGCCG 5298 Query 61 GATCC-CTAGT-CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | | ||| |||||| ||||| ||| ||||||||||||| ||||||||||||| Sbjct 5297 GATACGCCAGTTCGGCATCGTTTATGGTCGGAACTACGACGGTATGTGATCGTCTTCGA 5239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278386702050